RNA id: CI01000004_10692864_10704094.mRNA


Basic Information

Item Value
RNA id CI01000004_10692864_10704094.mRNA
length 3296
RNA type mRNA
GC content 0.46
exon number 24
gene id CI01000004_10692864_10704094
representative False

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10692637 ~ 10704094 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACACATCTAACCACACTATAAAAACCCTCTCACTAATAGCAAAGAATCCACAACCAAGCCAATATAGAGGAGAATCCAAATGGTGGGCAAAGCAAGGAAACGCAGTTGCTCTGGAGAAGCACTCCAAGTACTTGGACATACGCGACCACATCGGTGCCAGCCCACTGCACTACGCCTCATCCAAGGGATACTTTCGCATAATCAGACTTATTGTGCAGGTCACTGGACAACAAGAGCTCAATGCCAGAGATGAGGAGGGGAATACACCTCTTCACTGGGCCGTGCAGAAGGACCAGCCAGGGAGCTGCTCTGTGCTGCTGACTCTGGGAGCAGATCCTAACATCCTAAATAACAGCCAGCAGGCACCGCTACATATGGCAGTCAGCCTGGGCAAAAATTTTGTGGTAGAACAACTTGTCTTACATAAACAAACTGATGTGAACCTGGAAGGAGACATGGGAAACACCCCTGTTATTTTAGCTGCTTCTTTGGATAACCATGAGGCTCTGGTCATATTGAACAAACTTGGACATTTTCCAATTCATGCTGCTGCTTTTGCCGGAGCTAAGAAATCCATGGAGGTCATTCTTCTGAAAGGAGAAGAAGTCGGTCTGTCCATTGACAACCATGTAAACTACGTGGATAAATCTTGCAGCAGTCCACTCCACCTGGCTGTACGTGGAGGGAATCTTGACATCATTAAACTCTGCATTGCATATGGAGCAAAAATTGATCAGCAGCAGTGTGATAAATCCACTGCTCTCCACTTTGCATGTAGTCAAGGTGCCATTGAGGTTGTTAAAGTCATGCTCTCAGCTTACCATAAAGTGTGTGACCTTATCAACATCACTGATGGGGCCAACCAGACACCTCTACATAAAGCAGCGATTTTTGATCACTTTGAACTCTCCGAGTACCTTATATCACAGGGTGCTGACATTGACTTTGTTGACTGCAAAGGCCATTCTCCACTCCTTCTGGCAACAAGTTGCGGAGCATGGAGAACTGTCAGTCTGCTCCTCTCCCATGGGGCTGATCTGAAGAAAAAAGACAAATCTGGATGCAACTTCCTGCATCTGGCCATCCTGCAGCCCAGGGGTCTGAAAAACCTGCCTACAGAGGTACTGCAGCACGAGAGTGTGAGAGAGCTCCTCAATGATGAGGATATTGAGGGCTGTACTCCCCTCCATTACGCCTGTAGACTGGGAATACCAGAGTCTGTGAAGAACATGCTGGGATTAGAGGTTTCGCTGGACCAAAAGTCTAAACAGAAGAAATCTGCACTTCATTTTGCGGCCGAATTTGGGAGGATCAACACGTGCCACAGGCTTCTGGAGATGGTGACAGACACCAGACTGCTGAATGAGGGGGATGAGAAAGGACTGACACCTCTGCATATGGCCTCTCGTGGAGGTCACGTTAAAGTAGTTGAGCTTCTCCTACGCAAGGGGGCGCTGTTTCACAGTGACTATAGAGGATGGTCTTGTCTGCATCATGCTGCATCTGAAGGATACACTCAGACCATGGACACTTTGCTGACATCTAACATCAAACTTCTAAACAAAACTGATGGAGATGGGAACACAGCACTGCATCTGGCTGCTAGAGCAGGTCATGTGGCAGCCGTAAGACTTCTGTTATGCAGAGGGGCCAAGATCATCCTCAATAAGAATGATGCCTCTTTCTTGCACGAGGCTGTACATAATGGGAGGAAGGAGGTCACCAACACTGTGATTGAGAGTGACAGATGTGAAGAAGCGATGACATCGTACAAACCAAACTCAACAAAACGCTGCATTGTCATGGACATGATTGAGTTTCTTCCAGAGTCCTTTAAATCTATGGCGAATTTTAATCGTGTCAGCTTGCTGACCCATCCAGTCTGCAAGAAATATTTGGAGATGAAATGGAATGCCTATGGGATCAAAGCACATCTGCTCAATATGACTGTGTATGCGCTGGGGGTGTTTCCTTTAACTTATCTCATTGTGAACCTGAAGCCCACATTGGTCACTGCAAGAAATGTCACATCAGTCAACATGGTCTGCACGTCCTTGTACAAGCAGTCCTATATAACAACAGCATGCATGCTGCTGGTTCTTACTATGAACATGTATGCAGTTGGGAAAGAGATCCTGCAAATGTTTCAACAGCGGGTGAATTATTTGCGAGATTTTTCTAACTACATGGACTGGGCCGCTGCGATCTGTTCTCTGGTGTTCGTGGTGCCGTTGCTGATGAATGCGAAGAGTTCCTGGCACTGGCAAGCTGGAGCACTGGCAGCTCTGGCCTCCTGGATAAATCTCCTCCTCTATCTTCAACGGTTTGAACGGATTGGTATATATGTGGTAATGTTTCGGGAGATCTCACGGACACTGCTGAGCATTATCGTGTTGTTCTTCTACTTGATATTGGGATTTGCTTTGTCCTTCTATGCCTTGATGATCGAACAGCAACATTTTGGAAGGATGTTCCTGTCACTGCTGCAAACCTTTGTCATGATGGTTGGAGAAATCAACTACCAGGACAATTTCTTGAAACCCTACCTGCAAGGAGACCTTCCTTTTCCAAACTTGACATTGGCCATCTTTATTTGGTTTGTCTTACTCGTGCCTATTCTTCTCATGAACCTTCTGATTGAACTTCACACTCATCTGGAGGAGAGGCTTCCCTATTGGTTTATGAAGCGGGTGGACCAGGTCTCCATCAAAGAATTCCCAAACAGATGCTTCAGTGGAAAGAAAAGATGGTTTTTCGGTGGGAATGAGGTGAGGAAGTCCAGGACCCGTCTTAGTCCCACCATCCACCAGTTAACTCCACTGGAACGGGAGCTAACCAAACAGAAATACAGGCTGAAGGAGATATCGGACACTGTGGAAAAGCAACACAGCCTGCTAAAGCTCATAGTGCAGAAGATGGAGATCAGCTCAGAGGCCGAAGAACATGACGGACCCCCAGTCTTTCAGGAGCTGAAAGAGAAACTCCTCACCAGGAGCAAATGGGGTCCGCTGCTCAGGGCAGTGACCGCCAGAAAGAAGGGACTCTGCAATTTTGTAAAAACGTCATGAACGTCATGTTTCAACGGAATTGTTGTATTTACTCATAAACTGTGATGACATGGCTAATATTTCCTATTAATACCTTGCTTCTGTACAACAATCAAGGCTAAAACCAGATACCAAGCATCTAGTATTGTGTCTCCATTGGGTCATTATTACTATAAATTCAACCAAAGGTAAAACCTGTTTTTATTACTGAAAAAGCAATGCAAATTGGTTGTTCATTCATTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35253 lncRNA downstream 11630 10676417 ~ 10681007 (-) True G31148
TU35298 lncRNA downstream 21793 10670441 ~ 10670844 (-) True G31190
TU35294 lncRNA downstream 25502 10666929 ~ 10667135 (-) True G31186
TU35292 lncRNA downstream 27478 10664784 ~ 10665159 (-) True G31184
TU35287 lncRNA downstream 38698 10653690 ~ 10653939 (-) True G31179
TU35304 lncRNA upstream 8192 10712286 ~ 10712931 (-) True G31196
TU35308 lncRNA upstream 22818 10726912 ~ 10727142 (-) True G31200
TU35314 lncRNA upstream 46755 10750849 ~ 10752367 (-) True G31204
TU35318 lncRNA upstream 51135 10755229 ~ 10755530 (-) True G31206
TU35331 lncRNA upstream 68231 10772325 ~ 10772526 (-) True G31212
CI01000004_10619819_10627261.mRNA mRNA downstream 65376 10619019 ~ 10627261 (-) True CI01000004_10619819_10627261
CI01000004_10553379_10573352.mRNA mRNA downstream 117394 10553037 ~ 10575243 (-) True CI01000004_10553379_10573352
CI01000004_10458668_10465442.mRNA mRNA downstream 226934 10458662 ~ 10465703 (-) True CI01000004_10458668_10465442
CI01000004_10436514_10438365.mRNA mRNA downstream 253178 10436499 ~ 10439459 (-) True CI01000004_10436514_10438365
CI01000004_10290550_10295288.mRNA mRNA downstream 397280 10289863 ~ 10295357 (-) True CI01000004_10290550_10295288
CI01000004_10757852_10760211.mRNA mRNA upstream 53449 10757543 ~ 10761142 (-) True CI01000004_10757852_10760211
CI01000004_10766385_10766860.mRNA mRNA upstream 62246 10766340 ~ 10766860 (-) True CI01000004_10766385_10766860
CI01000004_10788659_10809214.mRNA mRNA upstream 84565 10788659 ~ 10809805 (-) True CI01000004_10788659_10809214
CI01000004_10847650_10847940.mRNA mRNA upstream 143463 10847557 ~ 10847995 (-) True CI01000004_10847650_10847940
CI01000004_10884499_10886045.mRNA mRNA upstream 180332 10884426 ~ 10886045 (-) True CI01000004_10884499_10886045
TU34309 other downstream 1285716 9377937 ~ 9406921 (-) True G30316
TU33669 other downstream 2334510 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 2334510 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 2727137 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 4060730 6631293 ~ 6631907 (-) True G29388
TU35313 other upstream 42343 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 703371 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 1072425 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 1672074 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 3846706 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032394 True 4245 mRNA 0.45 28 NC_007113.7 30116486 ~ 30135446 (-)