RNA id: CI01000004_10757852_10760211.mRNA


Basic Information

Item Value
RNA id CI01000004_10757852_10760211.mRNA
length 2443
RNA type mRNA
GC content 0.38
exon number 7
gene id CI01000004_10757852_10760211
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10757543 ~ 10761142 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAATTATACTATTTTATCGTAATCGTAAACGCAGTCGGTTTCAAACGTGAAAGGCGTTTCTCTGATCTGAAACTAGTCTTTAACTTTTAACTAAGTATTATTGAATCACAGTGATAAAACAGAATAAACCTTTATTAACATTATTTCAGTAGTTATGGTTTCAGTTCCGATTCTGCTGCCGAGTTTCGACTCCCTGACAGATTATTACACCCTCCTGAGTTTGCTACCCGATTGATGATTGGCTAATATAGCCCCTATAGCTAATCCTAAATCTACCATGGGGACTGAGGGAGGTAATAATGTGGCGAGCAGCAGACCTCTAGTCTAGACGTAAATAACATCCCATTGGAATTAGTCTAGGTCTGTTTCATAATAGAAAAGCTGCATAACTTTTAAAAAAGGGAACACTACAAGGGCAGATACTCTGACATTAGTTAACCCATTATAAACTATCAATGAATATTTCTTTACAGCATTATTAATAATGTTTCATGTTCATTTATGAACTTTAGTGGCGATTCCATGACTTTTTTTAAAAAAGGAGAAGGCAAAAGGTTAAGAGAGAGGCCAAATTTATCAAGTTAATATCAGGTATGTTCTTGAAACTTGGAAATATAATGTTTTTGACATTTTTGAAAGAAGTCAGGTTTTGCTCACCAAGGCTGCATTTATTTGATCAAAAATAGAGTAAAAACTGTAATATTGTGAAAAATTATTATCCTTTGAAATAACTGTTTTGTAATATTTATTCCTGTAATGGCAAAACTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGCCACATAATCCTTCAGAAATCATTCTAATATGCTGATTTGGTGTTCAAGAAACATTATCAATGTTGGAAAATATATATATATATATATATTGTTTTGCCTTAAAGATGTAAACAAAGAATTGGGGAAGACATGGCTCCCATCGCTTCTGATTTAACAGAGGAGAAGAGAAAGCAACTCTGTGCCTTGCTGGGGAATGTGGAACTGACTCTTCTCTACAAAGCTTCAGTCCATGGATATAATGCTTCTGCCTTCCACCAGCGATGTGACCATCAGGGCCCCACTTTACTTGTAGCCTACAACAGTTTAGGCTACATCTTTGGTGGATACACTAGTGTAGAATATGCTCAAAGTGGCCAGCAAATTACAGATAATGAAGCTTTTCTGTTCAGTGTTCAAGGTGAAACCCCTGTTCACTTTAAAGTTAACAAATTAAATGCACGTCTTGATGATGCTGGAGGACCTAACTTTTCCCAACAGTTGTACTTTTGCTACAATGACCAACCAGTTGTACATTACAAGTCAGTGAATTGGGTTCAGCATTTCAATACTGAAAAGTTGTATGGGAATAACACTGAGCTGACTGAATGTGAGGTGTACAAAGTCAATCAGAGCCTTCAGATCAGTTTCAAAGAGAAGCCATGGAGAAATATTCTTTGGACAGCCAAACAAAAAGAAGAGCTCATGGGATTGATCAGGAATCATAAACCCATTATGGCATCTGTGAGTCGGGTCAGAATCCTAATGATTGGTCCTATAGGTGCTGGAAAATCCAGTTTCTTCAACTCCATCAACTCCATCTTCATGGGTCATGTGACCAACAAAGCAATGTCAGGATCTGCAGGCACTAGTGTCACCACAAAGTTTCGCACATATCCAGTGAAAGATGGTCGTGAGAGAAAGCCATTGCCATTTGTGTTGTGTGACACCATGGGACTTGAGGAGCAATCAGGTGCAGGGCTGGATATTGAGGACATCAGCAGCATTGTTCAAGGTCAAGTACCAGACCGCTATAAAAGGGAAAAACTCAGTTCTGTACGTAGTCAATTGAACTCACTGGAGATTCCTCAGATGGTCTTGATGACAAAAGTAGATGAAACATGCCCTCATGTACAGAATGACCTTGAAAATATTTATGCAAGTTCCTATATCAAGATGAAGGTGCAGGAGGTGAGCTCTCGGTTGGGTGTTCCGGTGTCTTTTGTGTTGCCGGTGAAGAACTACAGCCAGGAGCTGGAGCTGGAGCTTAAATGTGATATTCTGCTTCTCTCCGCTATACAGCAGATGCTTCGTTTTGCAGACGACTATCTGGATGATGTGGTTGATTCCATTTAGGCCATACAAAGTGCTGCATATAGGGGTTTATACCTCTTGATCAGAACAAGGATTCATCTTAAGTCAGAAGATTATTCTCTTCTGTTTGTCCATTCTAGATCCTTCATAATCATACACAATATTCATTTAAGAAAATTATGGCAAATGCAAACAAAGTTCATATATCACTTAAGCTGCACATTACATTAAAATCATTGTTGCTTTTGTAGGTGCAATATTGCTGTGCCATGACCAGGTTTGTAGAATAATACTAGAATGATGTGTTAGGACTACAATTCAAGATGCTAAAATCTGTATAAGCCTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35318 lncRNA downstream 2013 10755229 ~ 10755530 (-) True G31206
TU35314 lncRNA downstream 5176 10750849 ~ 10752367 (-) True G31204
TU35308 lncRNA downstream 30401 10726912 ~ 10727142 (-) True G31200
TU35304 lncRNA downstream 44612 10712286 ~ 10712931 (-) True G31196
TU35243 lncRNA downstream 60634 10693827 ~ 10696909 (-) True CI01000004_10692864_10704094
TU35331 lncRNA upstream 11183 10772325 ~ 10772526 (-) True G31212
TU35345 lncRNA upstream 57008 10818150 ~ 10818353 (-) True G31224
TU35360 lncRNA upstream 70379 10831521 ~ 10831904 (-) True G31234
TU35370 lncRNA upstream 88289 10849431 ~ 10849634 (-) True G31243
TU35372 lncRNA upstream 97373 10858515 ~ 10858888 (-) True G31245
CI01000004_10692864_10704094.mRNA mRNA downstream 53449 10692637 ~ 10704094 (-) False CI01000004_10692864_10704094
CI01000004_10619819_10627261.mRNA mRNA downstream 130282 10619019 ~ 10627261 (-) True CI01000004_10619819_10627261
CI01000004_10553379_10573352.mRNA mRNA downstream 182300 10553037 ~ 10575243 (-) True CI01000004_10553379_10573352
CI01000004_10458668_10465442.mRNA mRNA downstream 291840 10458662 ~ 10465703 (-) True CI01000004_10458668_10465442
CI01000004_10436514_10438365.mRNA mRNA downstream 318084 10436499 ~ 10439459 (-) True CI01000004_10436514_10438365
CI01000004_10766385_10766860.mRNA mRNA upstream 5198 10766340 ~ 10766860 (-) True CI01000004_10766385_10766860
CI01000004_10788659_10809214.mRNA mRNA upstream 27517 10788659 ~ 10809805 (-) True CI01000004_10788659_10809214
CI01000004_10847650_10847940.mRNA mRNA upstream 86415 10847557 ~ 10847995 (-) True CI01000004_10847650_10847940
CI01000004_10884499_10886045.mRNA mRNA upstream 123284 10884426 ~ 10886045 (-) True CI01000004_10884499_10886045
CI01000004_10944147_11018487.mRNA mRNA upstream 181235 10942377 ~ 11018487 (-) True CI01000004_10944147_11018487
TU35313 other downstream 6902 10746437 ~ 10750641 (-) True G31203
TU34309 other downstream 1350622 9377937 ~ 9406921 (-) True G30316
TU33669 other downstream 2399416 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 2399416 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 2792043 7964364 ~ 7965500 (-) True G29656
TU36279 other upstream 646323 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 1015377 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 1615026 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 3789658 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU38247 other upstream 3807651 14568793 ~ 14569264 (-) True G33746

Expression Profile