RNA id: CI01000004_10847650_10847940.mRNA


Basic Information

Item Value
RNA id CI01000004_10847650_10847940.mRNA
length 439
RNA type mRNA
GC content 0.39
exon number 1
gene id CI01000004_10847650_10847940
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10847557 ~ 10847995 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTCACTATATTTACAACTCGTATATACATGACATTTACATGCAGACAAAAAATCATGGAGACTCTGTTTTCTCAGGACCAGATGGTGTCAAAGTCAATGTCTTTTTTTCCTGTTGAGGAGATTTTTCGTGACAGCACTGGCCTTAAATCCAGCCCAGCAAGACCAGCAAACCAAATGCGTGGTAATTACCAGCTGTTACATTACCAAGAGCTCTATTTCTTTGCATCCGTCCTTGGAGGATGGTTTCAAATGACCGCAAACACTCTGAACGCTTTGCCTCCTGGGGGATTCTGTAGGCTAAATGGAAGAATAATGGCCAATATTAATCCAGATCCAGCAGGATAGAAAGATATATGATTTAAATGCTAGTATGATTCATTAATCACGCTTCAGATACTCATAATACCCTCAACAGGCTATGTAATGAAGCAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35360 lncRNA downstream 15653 10831521 ~ 10831904 (-) True G31234
TU35345 lncRNA downstream 29204 10818150 ~ 10818353 (-) True G31224
TU35331 lncRNA downstream 75031 10772325 ~ 10772526 (-) True G31212
TU35318 lncRNA downstream 92027 10755229 ~ 10755530 (-) True G31206
TU35314 lncRNA downstream 95190 10750849 ~ 10752367 (-) True G31204
TU35370 lncRNA upstream 1436 10849431 ~ 10849634 (-) True G31243
TU35372 lncRNA upstream 10520 10858515 ~ 10858888 (-) True G31245
TU35385 lncRNA upstream 32300 10880295 ~ 10880865 (-) True G31258
TU35392 lncRNA upstream 41613 10889608 ~ 10889813 (-) True G31265
TU35402 lncRNA upstream 53134 10901129 ~ 10901386 (-) True G31271
CI01000004_10788659_10809214.mRNA mRNA downstream 37752 10788659 ~ 10809805 (-) True CI01000004_10788659_10809214
CI01000004_10766385_10766860.mRNA mRNA downstream 80697 10766340 ~ 10766860 (-) True CI01000004_10766385_10766860
CI01000004_10757852_10760211.mRNA mRNA downstream 86415 10757543 ~ 10761142 (-) True CI01000004_10757852_10760211
CI01000004_10692864_10704094.mRNA mRNA downstream 143463 10692637 ~ 10704094 (-) False CI01000004_10692864_10704094
CI01000004_10619819_10627261.mRNA mRNA downstream 220296 10619019 ~ 10627261 (-) True CI01000004_10619819_10627261
CI01000004_10884499_10886045.mRNA mRNA upstream 36431 10884426 ~ 10886045 (-) True CI01000004_10884499_10886045
CI01000004_10944147_11018487.mRNA mRNA upstream 94382 10942377 ~ 11018487 (-) True CI01000004_10944147_11018487
CI01000004_11043026_11046108.mRNA mRNA upstream 194885 11042880 ~ 11046108 (-) True CI01000004_11043026_11046108
CI01000004_11052319_11059170.mRNA mRNA upstream 203399 11051394 ~ 11059170 (-) True CI01000004_11052319_11059170
CI01000004_11073846_11086948.mRNA mRNA upstream 225684 11073679 ~ 11086948 (-) True CI01000004_11073846_11086948
TU35313 other downstream 96916 10746437 ~ 10750641 (-) True G31203
TU34309 other downstream 1440636 9377937 ~ 9406921 (-) True G30316
TU33669 other downstream 2489430 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 2489430 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 2882057 7964364 ~ 7965500 (-) True G29656
TU36279 other upstream 559470 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 928524 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 1528173 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 3702805 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU38247 other upstream 3720798 14568793 ~ 14569264 (-) True G33746

Expression Profile