RNA id: CI01000004_12625701_12630744.mRNA



Basic Information


Item Value
RNA id CI01000004_12625701_12630744.mRNA
length 2531
RNA type mRNA
GC content 0.41
exon number 10
gene id CI01000004_12625701_12630744
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12624321 ~ 12630926 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTTTAAAAGCATGCAATACACCAATGCTCACATCGCTCATAAATTCCCCCAAATTTCCATTTGGCTTTGAATAATATGATCTTAATTATTATTTTTGCCCTGTATAACATAATTCTAGGGTGTAATGATTTTTTATGCCCCTGACATATTGTTTGGAGGGTGACATAAAACTCTGATGACATGTGACATTTGGAAAAGGTCACCCCGCCCATCCCTGCTCATGTCTGTCTTCATAACACTGGCACTTGTCATATTGAAGCTGGCATTGGCAATCTTTGTCTCACAGGAAACCCTCAGCACTGTTCTTTTTGCTGGTCGTAGTTGTTGCCAGGCCTGGTCTTTTTTTTTTCTTGTGTGGTAGAAGGGAAGGAGAAAATTGTCACTGAAGGGAAAGAGGAACCGGATCACTCCCCCTCAGGGTTCCTGGGGGGCCACAAACAGCATGTCTGAGCCCGGTTCACGAGCACAGAATGACAGGGAGAAGCACTAATACTAATGTGGTAAATACGTCAGAAATGACTAGGGAAGGGCGGGAGAAGTTATGATGGAGGGCCGATACGCTGAGTCGAATGACAAGGGCTGATCTTTCTAAATTAAATGAAATTGCATTGTTGTTGTTTTGTGGGCCTTGGTTTAGAATCTGTCAGCATGTTACAAACCACAGCGCATTTATACAATTGCAAAAAGAATACAGCAAGACACTGACTCATTCATTTTACACGATTCCATACTTATAATCATCTTTAATATAATAATCATATAATATATTATTTTATTTTTTTATTTAAAATTATATTGTATAATATTATATATGTTATTAATGTATGTAAATTGATTGTAATTCTAACTTCTCCATTTTTAGACTGATTTTTAGATTTTTTTGTCATCCTTTTCATTATTATTCTTCCGGTCAGTTTTCAATTATGGAGTATTAGAAGAAAAATATGAGGCATTATTATATTATATTATATTATATTATATTATATTATATTATATTACAACAAATTGAAATATTATTTTCAAACATTAAACTGCATTGTAGAATTTTATTTGTCATTTTATCCTGTCAGTCTTATCATATCCACCTGTCTTTTTCTATTTCTGTTCTCTTTTATATTAATTTGTACTGCTGTGATGATACGCTTTTACCATTGCTGTTTGAAATTACCCTTTTCTGACAACTGAATTCTATGGTTTTAAAATGGCTGACCTCTGATCTCAGTCTGTTAAGTGATGTTTTTTGAGTAGGGCATTGCCTCACAGAGGACATAAAATATACATTTTTATGCATGTAGGGGTCCCAGCTTTGTGGTCGTAAATTATAGTAGGGCCGTCCTCACACCGCTATCCCACAGTGCAGTGGGCCAACCCTAAGCAAGATGGAGCTGTGGGACGGACAGGGCAGGATGCAACAGGTGACTCGCCTCTGCGAGGTGTCTGTTTGGTGTCGTGTGGCCTGCATTCTCCACTTCACACTCTCATTGTTATTTAATCCTGGTTTTGGTGCGGATGCTGATTTCAAAGTGGCAGTCCTCCTGAGCAGGGCAGGCAGCCCAGACTACAGCACCACCTGGCTGGCCGTTAGCCTGAGGAAGAGGCCCTTTGGAGAAACTTGGTACCACAGCCCACCCTGGCCTGTCAACCTGACAGAAACTGTCCCTCAGTCTTGGCCTTTCATATATACTTACGTTACGAGTGACAGTTTCTGGGACCAGGCCTCAGGCTCTTTCAGAGTGTCACATTTTACACTGCTGGAAAAAATTCCACTGTCTGTTTCACATCTAACTCTTAGGTGTTTATTTGTTATATCCACCCGTGCCAATTCAATAATTATGCAGGCAAACAGAGAGATTATGGAGACTCCCTATGAACTCCAGACTGGCTGGAGTCTGTCAATAAACAGGGCATGGGTCATTCTGCAGTTTGTAGTGTTAATGGCTCAAGGTCAGGGCCATAAAATGGGGGACAGAAAGGGTAGACGCGGCTTCTTGGGGTGGTTAAGAAGGGTTCAGAGTCTTAATAAGTCTTCATTCAGAGTGTTTTCTTTGAATACTATATCTCTCATCTCCAGACTTCCAAGTGTTGACACGGGCGTGAAGGTGGCTGGCTGTAACTGCGGCTTATTTAGTGTCAGGTCTCAGAGGCTGGTGTGTTTATGTGTGTGGGGAGGGTGTCAGTCACCCTGCTTTGGACCAGCCACCACCCTCCACCAGTCCGCAGCTGTGGGTCTGAGCCGTGCCACCTTCCTTGACACAATGGGGCCCTTTGACCACAGAGGGCAGATTGACACAAAGAGCCCTGCGTGCTGTACACTGCAGCACAATGCTATTGTTATCATATGCTGCTGAAAGCAAAGACCTGCTCTACTATTTGTCATTTTCAAGTGTCAAATGATTGCACAAATACAGTCTTTAAAAACACTTAGGAATGTAGACCTCATTTTATGAATGAAAAGAACAAGAACACAGTTAAGATGCAGAATTTTTTTAATGTTTCTTACTGTTGAAACATCACATGTGTGATCAAATAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU36636 lncRNA upstream 122440 12501478 ~ 12501881 (+) True G32296
TU36251 lncRNA upstream 136878 12486933 ~ 12487443 (+) True G31969
TU36249 lncRNA upstream 139415 12484698 ~ 12484906 (+) True G31967
TU36241 lncRNA upstream 150916 12473123 ~ 12473405 (+) True G31959
TU36233 lncRNA upstream 160947 12462530 ~ 12463374 (+) True G31952
TU36699 lncRNA downstream 32653 12663579 ~ 12663812 (+) True G32350
TU36720 lncRNA downstream 69689 12700615 ~ 12700910 (+) True G32371
TU36736 lncRNA downstream 74038 12704964 ~ 12781485 (+) True G32382
TU36768 lncRNA downstream 178691 12809617 ~ 12810075 (+) True G32414
TU36785 lncRNA downstream 222036 12852962 ~ 12853804 (+) True G32431
CI01000004_12594138_12621268.mRNA mRNA upstream 2530 12593163 ~ 12621791 (+) True CI01000004_12594138_12621268
CI01000004_12562823_12563491.mRNA mRNA upstream 60508 12561318 ~ 12563813 (+) True CI01000004_12562823_12563491
CI01000004_12553125_12559468.mRNA mRNA upstream 64445 12552774 ~ 12559876 (+) True CI01000004_12553125_12559468
CI01000004_12426409_12429382.mRNA mRNA upstream 194851 12426409 ~ 12429470 (+) True CI01000004_12426409_12429382
CI01000004_12422242_12423747.mRNA mRNA upstream 199628 12422080 ~ 12424693 (+) True CI01000004_12422242_12423747
CI01000004_12646972_12652534.mRNA mRNA downstream 15912 12646838 ~ 12652570 (+) False CI01000004_12646972_12652534
CI01000004_12696326_12707951.mRNA mRNA downstream 63451 12694377 ~ 12707996 (+) True CI01000004_12696326_12707951
CI01000004_12719753_12721562.mRNA mRNA downstream 87490 12718416 ~ 12722033 (+) True CI01000004_12719753_12721562
CI01000004_12764916_12775989.mRNA mRNA downstream 133990 12764916 ~ 12776172 (+) True CI01000004_12764916_12775989
CI01000004_12810922_12817913.mRNA mRNA downstream 179646 12810572 ~ 12818547 (+) True CI01000004_12810922_12817913
TU36123 other upstream 429174 12192130 ~ 12195147 (+) False G31865
TU35811 other upstream 956662 11664773 ~ 11665473 (+) False G31611
TU35813 other upstream 956743 11664773 ~ 11665473 (+) True G31611
TU35938 other upstream 981921 11637251 ~ 11642400 (+) True G31710
TU34813 other upstream 2126533 10497376 ~ 10497788 (+) True G30797
TU36655 other downstream 11828 12642754 ~ 12655711 (+) True G32314
TU37521 other downstream 1392621 14023547 ~ 14031127 (+) True G33092
TU38554 other downstream 2460318 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU38784 other downstream 3308431 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 3432489 16063415 ~ 16066464 (+) True G33815

Expression Profile


CI01000004_12625701_12630744.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
End of interactive chart.

CI01000004_12625701_12630744.mRNA Expression in each Bioproject

Bar chart with 14 bars.
CI01000004_12625701_12630744.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 12.
End of interactive chart.