RNA id: CI01000004_12748162_12752913.mRNA



Basic Information


Item Value
RNA id CI01000004_12748162_12752913.mRNA
length 993
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000004_12748162_12752913
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12747939 ~ 12753275 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAACTAATGGCTTTGTGAGGTAAAGGGAGTCAGAGAGGACAGGGCAAAAGATAACAGTGAGATTAGTTCAAAAGTGAGATTTGGCCTGAGGAAATTACCCATGACTGAGTGAGGGTCACTAATGCTGGCAGCTATGACAGCTGTTCAGACAGACAAGACAACCTTCACCTAGCCATGAAGTTCTGATGGAAGGTCACATGGGCAAAATGACTCTTCAAAACACAAGTCTTAGGGGAAAATTAATCATGCTATCGATTCACAAAGTGTAAAGTTTTGAAAAGAGTTGAAAAACCAAAACCAAAAAAAAAAAAAGAGAATAATTTCTAAGGTATTTAAAATCATCACATGAAGAGTAGAGAGAAATGAAGCATGATGGACATAAAGAGAGAGAGAGAGAAAGAGAGCAGCTGGAAGCCCAGGAGCGCAGCAGCTGCACCCAGACCACCAACGCTCCCATTCAGCGACACTTGACTCTCAAATCCTCATCCCTTGACATTGCCAATTCTCCTGTAAGGTCCTGCAAGAGGCCAGAGGAGGGATATACCCCTCCGTTTGTCTATCGGTCAGGCCGCGGCCTTGTAATTCACCCGTTCGCTGCATGTTACAAGATTTTCTCAGCAATAAACGGGCAAAAATCTACAGAGGACATTATGTGGCAGACCGTGAAAAGCTGCATTACAAAAAGTATCGTACAGACAAAAGAAAGCTCTCAGTGGCAGCTCTTGGCGATGGACCCAACTGAGCATCCTGTTATTGGTGTTAAAAGTTGACAGACTTCTGGCATTTTGCCTAATGAGCATTTGAAAGAGGTGTATAATGGTGGTGATGCAGTCGATGAGCAGATTTCAAGAGGACGGCACAGACATCTCTATCTGCCTCACAATGTGAAATGGAACACATGTTAACTGCATACAGTACTAATGATTTAAGAGTTAAGAGTCAAAAAAAACTAATTCAGTATTCAGCCCATAGTCTAGCTATCAAGGTATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37101 lncRNA downstream 34763 12707058 ~ 12713176 (-) True G32707
TU36981 lncRNA downstream 92112 12600800 ~ 12655827 (-) True G32606
TU37026 lncRNA downstream 153917 12593388 ~ 12594022 (-) True G32647
TU36625 lncRNA downstream 273757 12473942 ~ 12474182 (-) True G32285
TU36621 lncRNA downstream 280610 12467119 ~ 12467329 (-) True G32281
TU37095 lncRNA upstream 22507 12775782 ~ 12781490 (-) True G32701
TU37176 lncRNA upstream 44407 12797682 ~ 12797931 (-) True CI01000004_12781663_12809789
TU37114 lncRNA upstream 159939 12913214 ~ 12921534 (-) True G32720
TU37195 lncRNA upstream 212595 12965870 ~ 12966103 (-) True G32798
TU37207 lncRNA upstream 229181 12982456 ~ 12982781 (-) True G32810
CI01000004_12574165_12577698.mRNA mRNA downstream 167760 12574085 ~ 12580179 (-) True CI01000004_12574165_12577698
CI01000004_12550061_12550882.mRNA mRNA downstream 197008 12549886 ~ 12550931 (-) True CI01000004_12550061_12550882
CI01000004_12404227_12411145.mRNA mRNA downstream 336274 12403532 ~ 12411665 (-) True CI01000004_12404227_12411145
CI01000004_12364142_12368537.mRNA mRNA downstream 379267 12364035 ~ 12368672 (-) True CI01000004_12364142_12368537
CI01000004_12345221_12345884.mRNA mRNA downstream 401630 12344810 ~ 12346309 (-) True CI01000004_12345221_12345884
CI01000004_12781663_12809789.mRNA mRNA upstream 28250 12781525 ~ 12809789 (-) False CI01000004_12781663_12809789
CI01000004_12823734_12925962.mRNA mRNA upstream 70459 12823734 ~ 12925962 (-) True CI01000004_12823734_12925962
CI01000004_12952019_12956814.mRNA mRNA upstream 198484 12951759 ~ 12956814 (-) True CI01000004_12952019_12956814
CI01000004_13086552_13088659.mRNA mRNA upstream 331549 13084824 ~ 13088898 (-) True CI01000004_13086552_13088659
CI01000004_13089864_13091636.mRNA mRNA upstream 335308 13088583 ~ 13091669 (-) True CI01000004_13089864_13091636
TU36531 other downstream 363159 12376168 ~ 12384780 (-) True G32207
TU36455 other downstream 966988 11776519 ~ 11780951 (-) True G32150
TU36279 other downstream 1335032 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU35313 other downstream 1997298 10746437 ~ 10750641 (-) True G31203
TU34309 other downstream 3341018 9377937 ~ 9406921 (-) True G30316
TU38237 other upstream 1797525 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU38247 other upstream 1815518 14568793 ~ 14569264 (-) True G33746
TU38255 other upstream 1825183 14578458 ~ 14579001 (-) True G33750
TU38261 other upstream 1828131 14581406 ~ 14581873 (-) True G33755
TU38263 other upstream 1831896 14585171 ~ 14585745 (-) True G33756

Expression Profile