RNA id: TU37176


Basic Information

Item Value
RNA id TU37176
length 250
lncRNA type sense_over
GC content 0.46
exon number 1
gene id CI01000004_12781663_12809789
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12781525 ~ 12809789 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGTAACCCTCCACCCAGCTAAGAGGAATGCAAACAGTAAGTCCTGCTCAGCAGGGCAGCAGGGTATTGAGATAGAGGGAGGGGAGCTGGAGCGAGCAGCCCGATCCATCCCTCCATCAGAACAAAAGACCTCATTGTGAGCAAATGAATACCAGATCCCAACATATGTAAGATTCCTTGGCCTTAAAAGAAAAGTGAAGAGAGTTTAAGTGACTATATTTCTTATGTAACGGAGAAGAAGTAGGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37095 lncRNA downstream 16192 12775782 ~ 12781490 (-) True G32701
TU37101 lncRNA downstream 84506 12707058 ~ 12713176 (-) True G32707
TU36981 lncRNA downstream 141855 12600800 ~ 12655827 (-) True G32606
TU37026 lncRNA downstream 203660 12593388 ~ 12594022 (-) True G32647
TU36625 lncRNA downstream 323500 12473942 ~ 12474182 (-) True G32285
TU37114 lncRNA upstream 115283 12913214 ~ 12921534 (-) True G32720
TU37195 lncRNA upstream 167939 12965870 ~ 12966103 (-) True G32798
TU37207 lncRNA upstream 184525 12982456 ~ 12982781 (-) True G32810
TU37219 lncRNA upstream 201211 12999142 ~ 13000643 (-) True G32822
TU37220 lncRNA upstream 204300 13002231 ~ 13002542 (-) True G32823
CI01000004_12748162_12752913.mRNA mRNA downstream 44407 12747939 ~ 12753275 (-) True CI01000004_12748162_12752913
CI01000004_12574165_12577698.mRNA mRNA downstream 217503 12574085 ~ 12580179 (-) True CI01000004_12574165_12577698
CI01000004_12550061_12550882.mRNA mRNA downstream 246751 12549886 ~ 12550931 (-) True CI01000004_12550061_12550882
CI01000004_12404227_12411145.mRNA mRNA downstream 386017 12403532 ~ 12411665 (-) True CI01000004_12404227_12411145
CI01000004_12364142_12368537.mRNA mRNA downstream 429010 12364035 ~ 12368672 (-) True CI01000004_12364142_12368537
CI01000004_12823734_12925962.mRNA mRNA upstream 25803 12823734 ~ 12925962 (-) True CI01000004_12823734_12925962
CI01000004_12952019_12956814.mRNA mRNA upstream 153828 12951759 ~ 12956814 (-) True CI01000004_12952019_12956814
CI01000004_13086552_13088659.mRNA mRNA upstream 286893 13084824 ~ 13088898 (-) True CI01000004_13086552_13088659
CI01000004_13089864_13091636.mRNA mRNA upstream 290652 13088583 ~ 13091669 (-) True CI01000004_13089864_13091636
CI01000004_13094468_13114401.mRNA mRNA upstream 295655 13093586 ~ 13114998 (-) True CI01000004_13094468_13114401
TU36531 other downstream 412902 12376168 ~ 12384780 (-) True G32207
TU36455 other downstream 1016731 11776519 ~ 11780951 (-) True G32150
TU36279 other downstream 1384775 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU35313 other downstream 2047041 10746437 ~ 10750641 (-) True G31203
TU34309 other downstream 3390761 9377937 ~ 9406921 (-) True G30316
TU38237 other upstream 1752869 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU38247 other upstream 1770862 14568793 ~ 14569264 (-) True G33746
TU38255 other upstream 1780527 14578458 ~ 14579001 (-) True G33750
TU38261 other upstream 1783475 14581406 ~ 14581873 (-) True G33755
TU38263 other upstream 1787240 14585171 ~ 14585745 (-) True G33756

Expression Profile