RNA id: CI01000004_13094468_13114401.mRNA


Basic Information

Item Value
RNA id CI01000004_13094468_13114401.mRNA
length 5325
RNA type mRNA
GC content 0.50
exon number 21
gene id CI01000004_13094468_13114401
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 13093586 ~ 13114998 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCCTGTGTGATAGCGTGTTAAAATACGAGCTGAGGCTATTGGGAATGTGCAGAGCGGAGCAGCAGTGCAGTGAAAGAGCTCCTCTAGCACTTCCCCCTCCCGGCGCTGATGTGAGGGGCTGCCTGCCTGGGTGGTCTCCCTCTCTCTCCACTTTGGTGAGCTGTTGCTTAGCAGCTAATAATAGGAGATGTTTGCAAAGTAATTTGCCTCTTCCTCGGCCAATGAGAACCAGAGCACTTTTCCATCAAACCACCCTTTTCAGGGTTTGCAAAGGGGCTACCTCTCCAAATGTTACTGCAACAGGATCAGAGGTAGACTGGCGGAATCCGCTCGCGACTTTCTTCTGCTTTAAAACGAGTTACGCGCTATAGCTGGACGAATGAAGACCGAAGGATCTATACGGATTCGCGCACATAATGTTGGGATGGAGTTGGAAGACTTTGGCTCAAGGAAAGACTAGAGAATATTTCTTAAAGTTGAACCCGGTGGATGCGCGTGTCGCGAATCTTGGATTATTACTATTATCGCCTCTGCCTAACGCACCGCGTTTGCCTTTAACTTTCTTCAGCGCTTCTTCTGCCTCCCGTTTGGACTATGGCCTCGGATCCCAGAGACCCGGGACCGGCCGGTGGTGTTTTTGGAGATTTACCCCCAAGTTACACACGCTCTCCGCCGCCTGTGAACTCAGATCTCCTCCGAAGACCCAGTTACTGCCACGCCGCTTTTGCGTTAAAACAGATTTCTAAGGGGAAAGCTGTGGGACAGAAAGCACCACTGTGGATTCGGGCGAAGTTCCAGGCTTTTCTCTTTTCTCTGGGCTGTCACATCCAGCGACACTGTGGAAAAGTCCTTTTCATTGGACTGCTTGTGTTCGGAGCCCTGTCTGTTGGTTTGCGGGTCGCTGCCATTGAAACGGACATTGAGAAACTATGGGTGGAAGCTTTATTTGGTTTTCACACTGCCAAATTCCTTCTAAGCCCCCTAGGCTTTCGCCACACTGCTGATCCCCTGCACAGATGGGCTGTGTGTGAATCGTTAGCCATCTTTGAGAAAGAAGAGGAAGAAAAAATCAAACAAAGAGCTTGGAATGGACATTATGGGGGCTTGACAGGACCAAGGCGAAAGAGCTGGACCGGCTTGTTTTGTTCTTGGTGGTTTCATATACTAATGTGTGTGGGAGAAAAGGGGAAAACAGAAAGAGAGAATGAATTCGTGTATAGGAGAGTGTGTGCGTGGGCACGCACTGGCACCCGACTGTGTATCTGTGCTCTTGGGTTTACTTGGGTGGTGAAAACAGCTGGCAGTCGAGTGAGTAAGGAGCTACGCTACACAAAAGAGAAGCAGGGAGAGGAGTCAGTGTTCACCTCACAGATGCTCATACAGACACCCAAACAGGAAGGAACCAATATTCTTACCCAGGAGGCTTTGCTGCTCCACCTGGAGGCTGCTTTGTCAGCCAGCAAAGTTCAAGTGTCTCTTTATGGAAAATCTTGGGATCTTAATAAAATTTGCTTCAAATCTGGAGTCCCAATTATTGAAAATGTCATGATTGAGAGGATGATTGACAAGCTTTTCCCCTGTATGATCGTGACTCCTTTGGACTGCTTTTGGGAAGGCTCCAAGTTGCAGGGAGGCTCCGCCTACTTACCGGGCATGCCTGACATTCAGTGGATGAATCTGGACCCCCTCAAGCTAATGGAAGAGTTGAGCCAGTTTACATCTTTAGAGGGCTTTCGAGAGATGCTGGATAAGGCTCAGGTTGGCCATGCCTATATGAACCGCCCATGCTTGGATCCCAACGACACAGACTGCCCTTACAGTGCCCCTAATAAGGACCCATGGCAGGTTCCCGACATTGCTGCTGAACTTCAGGGTGGTTGCCATGGTTTCTCCAAGAAGTTCATGCACTGGCAGGAGGAGTTGATCCTGGGTGAAAGAGTAAAGGACTCCCAGAATGCCTTGCAGAGCGCGGAGGCTCTTCAAACCATGTTCCTCCTCATGAGTCCTAAACAGCTCTATGAGCACTTTAAAGATGACTATGAGATCCATGACATCAATTGGAATGAGGACAAGGCCACTGCCATCTTGGAGTCTTGGCAGAGGAAGTTTGTTGAGGTTGTCCATGGGAGCATTCCTCAGAACTCTTCCTCCAATGTTTACGCCTTCTCTACCACCACTCTTAATGACATCATGAAGTCTTTCTCTGACGTCAGCGTAATCAGGGTGGCAGGTGGTTATCTGCTCATGCTGGCATACGCATGCGTGACCATGCTCCGTTGGGACTGTGCTAAGTCTCAGGGTGCTGTGGGGCTGGCAGGAGTGCTGCTAGTCGCTCTATCTGTTGCTGCAGGACTTGGACTGTGCTCACTGTTGGGGCTGTCCTTCAATGCCGCCACCACACAGGAGCGGACAGGTGACTGCCTGAGAAGAACAGGCACCAGTGTGGCTCTCACCTCCATCAATAACATGCTTGCTTTCTTCATGGCTGCCCTAGTGCCTATTCCTGCTCTCCGTGCCTTCTCACTTCAGGCAGCTATTGTGGTGGTCTTTAACTTTGCCATGGTTCTGCTGATCTTCCCTGCCATTCTGAGCTTGGACCTGCAGAGGCGGGAGGACAAAAGACTGGACATCCTGTGCTGTTTCTACAGTCCCTGTTCCTCTCGGGTGATCCAGATCCAGCCTCAGGAGTTCTCCGACGCTAATGACAACCACCAGCATGCTCCGGCCACCCCGACCTACACTGGCTCCACTATAACCACCAGCACCCACATCACCACCACTGTGCAGGCCTTCACCCAGTGTGATGCAGCTGGTCAACATATTGTCACCATCCTGCCACCCACCTCCCAGATCTCCACCAGTCCTCCATCCATGGTCCTATCCACACCCACTCCCACCGCTGACCCTTATGGCTCCCAGCTGTTCACCACCTCCAGCTCTACCCGAGACCTTCTAGCTCAGGTGGAGGAGCCCAAAGAGGGACGAGAGTGTGTGCCTCTTCCCTTCTTTCGCTGGAATCTGTCAAACTTTGCACGGGAAAAGTATGCCCCTCTGTTGCTGAAGCCCGAAACTAAGACTGTAGTGGTCGTTGTTTTCGTGGCTCTTCTGAGCCTCAGCCTCTATGGTACCACAATGGTTCATGATGGACTTTACTTGACTGATATTGTTCCCAGGGACACAAAGGAGTATGACTTCATCACTGCCCAGTTTAAATACTTCTCCTTCTATAACATGTACCTGGTTACCATGGATGGCTTCGACTATGCCCGTTCTCAAAGACAGCTTCTACAACTTCACAATGCCTTCAACTCTGTAAAATATGTAGTTAAAGACAGCAATCACAGACTCCCCAGAATGTGGCTGCACTACTTCCAGGATTGGCTCAAGGGTCTTCAGGCTACATTTGATGCTGATTGGGAAGCTGGCAGGATCACCTCTGACAGCTATCGCAATGGCACAGAAGATGGAGCGCTGGCCTATAAGCTTCTCATACAAACTGGCTCTAAAAAAGACCCTTTCAACTACAGCCAGCTTACATCCCGTCGCCTAGTGGATGAGGATGGTCTCATTCCACCAGAGGTTTTTTACATCTACCTGACAGTATGGGTCAGTAATGATCCGCTGGGCTATGCTGCCTCCCAAGCCAACTTTTACCCCCATCCTCGAGAGTGGATCCATGATAAGTACGACACCACTGGGGAGAACCTTCGCATCCCTGCGGCAGAGCCTCTAGAATTTGCTCAGTTTCCTTTCTACCTAAATGGCCTCAGACAAGCCTCAGACTTCATTGAAGCCATTGAGAGCGTGCGCACAATCTGCGAGGAGTTCATGCGGCAGGGAATCCAGAACTATCCAAACGGCTACCCCTTTTTGTTTTGGGAACAGTACATTGGTCTGCGCCACTGGTTCTTGCTGTCCATCAGCGTAGTGCTTGCCTGCACCTTCCTGGTGTGCGCCATCCTTCTGCTCAACCCCTGGACCGCAGGCATCATTCAAGACTTTCTAAAGAAGAAATGCACAGCTCTCCTGAAGGCTTTTACCTCCGACTGCCTTTGTCCAGAAATTTGGGGACAGGACGGATCTGCCCAGTCACGACCTTGGCCTGCTAAACCCATCCATCAGGGACTGGATGTAGTGGGGGTAGTGGGTGGGTGGGTTTTTATTTTGGCCATGATGACAGTGGAACTTTTTGGTATCATGGGCCTAATTGGTATCAAGCTGAGTGCCATTCCTGTGGTCATCCTTATAGCCTCTGTTGGTATTGGAGTGGAGTTTACTGTGCACATTGCACTGGGTTTCCTGACTGCCATTGGGGACAGGAACACTCGTTCAGCCGTGGCTATGGAGCATATGTTCGCTCCTGTGATTGACGGCGCCATATCCACTCTGCTGGGAGTGCTCATGCTTGCTGGCTCAGAGTTTGACTTCATCATGAGGTGAGTGATTGACACTTCTCCAGACAGGTCTCTGAGGTCAGCCCATATGCTGCCTTTCAAAATGGTGGCAGGCCTTAGGCAGGGAGACAGTTGTCCATGTGGCTCTAGGGTACAGGTGGTAACGTTTGGCTCCCCATCACCTGGTGTTGTCAGTCTCTAACTCCCCTTAGACCACCACAACACTCTTACAAACATTTTTGAGCTGCTTGAATGCACAACAAATGGAGGAAACATCAAGGGAGTGCAGCAGCTGCTTGTAAACATGTAAATATACAACCCACTGTGCGGTGACTCAACATGCACACACTTGCACCCTGATTGTGGGGAGGAGGTCAATGGCCCAATCATTTGGTTGTGAACTCCCTCTAGCCACTGCATTTGGGCAGCTTTTCTGCCTGGTTTAATGCCTGCTTCACAGGAAGAAAAAAAGTCAAATAGTAGTTTTTTTCAACTGAATTTGGGCTCTGCTGAAAGCAAACCACAACCTTGAGAGCCGCCTAAAACAGACCAATGACATAAAAATGACTTAGTTAGAGGATCCAGCACAACATAGCTGCATGTTGAAACTAAAAATTGTCTCTTGATCATTTGTTTTCAAGCACCAAAGAGTAACTTGGATATGAGGAAGAGGTTTGGGTATCCAGGTAACTGCAGAAGGGTGTTAGAGCAGATTGCTCTAAGACAGTGGTAAAACTGGAAAAAAGATTGGGGGTTGGGGATTGGAGCAAGCCATTTGGTGCAAGCGGTGTGCCAGCGCTAGGGCATTCACAGTGGGAGGTCCTGTTTAGATGTAGAGAGAAAGAGAGAGAGAGCTCTGGCCTTCTAGCTGGGGAGTAGCATAAATACATTGCTGTAAACATCTCCTGGCTATGGGACACTGAATAAA

Function

GO:

id name namespace
GO:0009954 proximal/distal pattern formation biological_process

KEGG:

id description
K06225 PTCH1; patched 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37109 lncRNA downstream 46675 13046262 ~ 13046911 (-) True G32715
TU37104 lncRNA downstream 47423 13045819 ~ 13046163 (-) True G32710
TU37220 lncRNA downstream 91044 13002231 ~ 13002542 (-) True G32823
TU37219 lncRNA downstream 92943 12999142 ~ 13000643 (-) True G32822
TU37207 lncRNA downstream 110805 12982456 ~ 12982781 (-) True G32810
TU37247 lncRNA upstream 5238 13120236 ~ 13120630 (-) True G32848
TU37248 lncRNA upstream 8241 13123239 ~ 13140987 (-) True G32849
TU37082 lncRNA upstream 8713 13123711 ~ 13164017 (-) True G32693
TU37253 lncRNA upstream 63231 13178229 ~ 13178450 (-) True G32854
TU37257 lncRNA upstream 68230 13183228 ~ 13183457 (-) True G32858
CI01000004_13089864_13091636.mRNA mRNA downstream 1917 13088583 ~ 13091669 (-) True CI01000004_13089864_13091636
CI01000004_13086552_13088659.mRNA mRNA downstream 4688 13084824 ~ 13088898 (-) True CI01000004_13086552_13088659
CI01000004_12952019_12956814.mRNA mRNA downstream 136772 12951759 ~ 12956814 (-) True CI01000004_12952019_12956814
CI01000004_12823734_12925962.mRNA mRNA downstream 167624 12823734 ~ 12925962 (-) True CI01000004_12823734_12925962
CI01000004_12781663_12809789.mRNA mRNA downstream 283797 12781525 ~ 12809789 (-) False CI01000004_12781663_12809789
CI01000004_13127356_13168751.mRNA mRNA upstream 12358 13127356 ~ 13168751 (-) False CI01000004_13127356_13168751
CI01000004_13208157_13210917.mRNA mRNA upstream 92883 13207881 ~ 13210917 (-) True CI01000004_13208157_13210917
CI01000004_13354130_13419831.mRNA mRNA upstream 239132 13354130 ~ 13419831 (-) True CI01000004_13354130_13419831
CI01000004_13720679_13777075.mRNA mRNA upstream 605459 13720457 ~ 13777075 (-) True CI01000004_13720679_13777075
CI01000004_14041671_14073418.mRNA mRNA upstream 926078 14041076 ~ 14073770 (-) True CI01000004_14041671_14073418
TU36531 other downstream 708806 12376168 ~ 12384780 (-) True G32207
TU36455 other downstream 1312635 11776519 ~ 11780951 (-) True G32150
TU36279 other downstream 1680679 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU35313 other downstream 2342945 10746437 ~ 10750641 (-) True G31203
TU34309 other downstream 3686665 9377937 ~ 9406921 (-) True G30316
TU38237 other upstream 1435802 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU38247 other upstream 1453795 14568793 ~ 14569264 (-) True G33746
TU38255 other upstream 1463460 14578458 ~ 14579001 (-) True G33750
TU38261 other upstream 1466408 14581406 ~ 14581873 (-) True G33755
TU38263 other upstream 1470173 14585171 ~ 14585745 (-) True G33756

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032565 True 4420 mRNA 0.50 21 NC_007113.7 33969667 ~ 33993533 (-)
bowfin (Amia calva) AMCG00005034 True 5164 mRNA 0.53 22 CM030140.1 13139180 ~ 13170347 (-)