RNA id: CI01000004_13467845_13475703.mRNA



Basic Information


Item Value
RNA id CI01000004_13467845_13475703.mRNA
length 1118
RNA type mRNA
GC content 0.44
exon number 4
gene id CI01000004_13467845_13475703
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 13467845 ~ 13476204 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGCTTGCAGCTGCTGTTGGCTTCAGTTCTGCTCTTCTTTCCTCAGTGCTCCCAGTGTGCCGCGCTGACCGACTGCCGCAGCCTGACAACCGCTACACAGTCTCCGGCAAGATGCTACTGCCACACTCCGGTCTGCTTATCGGCGTTCTCTGGATTGTCATCTTCAATTCCGCTGGTGTGAAATGTCTGAACGGCGAAGAAGATCAGTCTCAAGACATGGAGTGCAAAATGAAAAGCGTTACGGTATCCGCTTTGCCGTTTTTGCGAGAGAACGACCTGAGCATCATGCACAGCCCGTCGGCCTCCGAGCCCAAGCTGCTATTCTCCGTCAGGAACGATTTTCCGGGCGAGATAGTCGTTGTTGACGATTTGGAAAATACGGAGCTTCCGTACTTTGTATTGGAAATATCCCTCAGGCCTAGTGCAGAAACTCAAATAGGTCAGTTCTATTATATTCTTTGTCCGGAGAAATACGCTCGAAATCCAGGATTTAGAGGCGAGCTTTACTGTGTGTTTGTGAAGAAGGTTCTGCGAGACAGCACAGGAAGGTTGTGTGGCAATGAATGGTTTCCATGGCAACAAGAGCTGGTGCTTAAAGGATGCCTTGAAGAGTGGTGACATTACGCTTTCACCTCAAGAGAGAAACAGCAATTCTACCCAACTACATCTGGAGAGAATCAAATGCAAATTATCTTTTAGTTTACAATCGCAAGCGTTGGCTTCGAGTCCCATCTCTGTCACAATCGATATATGTAAATTTTTTGTTTCTAACAAACAGCCTCATGGTCTTTGCACAGCGCGATTATAGTTGTCTCAGCAAATGTCTTTGTTTTGACTGAATCATAACAATTGGAAAAATTAAATTACTTGGAATCCCTTGTTGTATATTTAACACGATTGAGCATGTAAGTACAGACATTGAAGTAGAAACATTTTACAACAAGCAAACAAGCCGATTTTGCTTTCCATCAGAGTTCACAGTTTTCACACCGCTTGTTTAACTCTTTAGCCTTTGAGTCCCTTCAGTTTGCCTCAACAACAGCTCAACTACATGCTCAGATTATGTGGAACATCACATAGCGTTCAGGAGAAAATAGTCCATGATGACTTTGAACAAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37332 lncRNA upstream 136461 13331184 ~ 13331384 (+) True G32927
TU37331 lncRNA upstream 138295 13329314 ~ 13329550 (+) True G32926
TU37294 lncRNA upstream 210623 13256930 ~ 13257222 (+) True G32894
TU36974 lncRNA upstream 234894 13231587 ~ 13232951 (+) True G32599
TU36970 lncRNA upstream 273823 13193719 ~ 13194022 (+) True G32595
TU37439 lncRNA downstream 64389 13540593 ~ 13543079 (+) True G33029
TU37369 lncRNA downstream 164353 13640557 ~ 13666445 (+) True G32961
TU37367 lncRNA downstream 174854 13651058 ~ 13752853 (+) True G32959
TU37498 lncRNA downstream 302562 13778766 ~ 13779068 (+) True G33077
TU37507 lncRNA downstream 349776 13825980 ~ 13826207 (+) True G33086
CI01000004_13211489_13233786.mRNA mRNA upstream 233651 13211489 ~ 13234194 (+) True CI01000004_13211489_13233786
CI01000004_13197104_13205895.mRNA mRNA upstream 261260 13197104 ~ 13206585 (+) True CI01000004_13197104_13205895
CI01000004_13062721_13076100.mRNA mRNA upstream 391617 13062721 ~ 13076228 (+) True CI01000004_13062721_13076100
CI01000004_13043279_13051835.mRNA mRNA upstream 415881 13043237 ~ 13051964 (+) False CI01000004_13043279_13051835
CI01000004_12984968_12997831.mRNA mRNA upstream 469782 12984968 ~ 12998063 (+) True CI01000004_12984968_12997831
CI01000004_13512059_13706090.mRNA mRNA downstream 35855 13512059 ~ 13706090 (+) True CI01000004_13512059_13706090
CI01000004_13708254_13713625.mRNA mRNA downstream 231683 13707887 ~ 13714179 (+) True CI01000004_13708254_13713625
CI01000004_13785437_13800307.mRNA mRNA downstream 308612 13784816 ~ 13800307 (+) True CI01000004_13785437_13800307
CI01000004_13959453_14004808.mRNA mRNA downstream 483249 13959453 ~ 14004808 (+) True CI01000004_13959453_14004808
CI01000004_14036114_14036449.mRNA mRNA downstream 559189 14035393 ~ 14036589 (+) False CI01000004_14036114_14036449
TU36655 other upstream 812134 12642754 ~ 12655711 (+) True G32314
TU36123 other upstream 1272698 12192130 ~ 12195147 (+) False G31865
TU35811 other upstream 1800186 11664773 ~ 11665473 (+) False G31611
TU35813 other upstream 1800267 11664773 ~ 11665473 (+) True G31611
TU35938 other upstream 1825445 11637251 ~ 11642400 (+) True G31710
TU37521 other downstream 547343 14023547 ~ 14031127 (+) True G33092
TU38554 other downstream 1615040 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU38784 other downstream 2463153 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 2587211 16063415 ~ 16066464 (+) True G33815
TU39001 other downstream 3501124 16977328 ~ 17025469 (+) False G34400

Expression Profile