RNA id: TCONS_00013084


Basic Information

Item Value
RNA id TCONS_00013084
length 1661
RNA type mRNA
GC content 0.54
exon number 3
gene id XLOC_006798
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36406274 ~ 36439061 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caGTACATCTTGTCTGGCTCTGATGATTTTAACCTTTACATGTGGAGAATTCCCACTGACCCTGAAGCAGGAGGCGCGGGTCGAGTGGTGAATGGGGCCTTTATGGTTTTAAAAGGTCATCGGTCCATTGTGAATCAGGTCCGCTTTAACCCTCACACGTACATGATCTGCTCCTCCGGGGTGGAGAAGGTCATCAAGGTTTGGAGTCCGTATAAGCAGCCAGACAGTTTAGGAGATCTAGAAGGCCTGGTGGAAGACAAGTCTCGCTCTCTCTACACTCATGAGGAATACATAAGCCTGGTACTCAACAGCGGGACCGGCCTGTCACACGATTATGTCAGCCAGTCAGTGCAGGAAGACCCTCGAATGATGGCCTTTTTTGACTCACTGGTTCGGCGTGAGATCGAGGGCTGGAGCTCGGACTCTGACAGCGATTTGAGCGAGGGTGCGATTCTGCAGCTGCATGCCAGAGCCCGGCGGTCGACCCGCTCCACACGATCCACACCACGATCTCCTGCTGCTGTGTCTGCCGCTCATCATAGCGACTCCGAACACTCGTCTTCATCTTCTCTAGCGGGACCTGATGTGTCCGGGAGCGAACGGACGGATCAGGATAGAAGTGGGTCACAGAGGAACCGGGCCAGACCACGTGCGTCTGCGTTTCTGCTTGATCTTGTGAACGAGGATTCAGATTCCAGTGGGTTTTGGTTAGACCCGATGCCCCGTCCCAGATCCCCTAGCCCACGTGAAAACTCAAGTCTTTCTAGCCACGCCTCCTCAGCGGGCGTAGCCTCCAGTTCAAGCTCCTCCCCCAGCTCATCTTCTAGCTCCTCCTCCAGCACTGATGGAGTTGACGAGGAGCTGCGCAGGAGCAGGATGCGACAGCGCAATGCAGCCAGATGGCGCCGCCATATTGGCTTTTCTCCAAGAGACTCGGCCCAAACACTTCACAGCGCCACAGACTCCTCCAACTATCCCAACATTTCCATCCACGATCAGTCGTCCCCCTCTTCGTCCTCAGGTGACGAAGATCGGCCTTTCAGAAATCGTGGAAAACAAAAGCCAAGTCCGTCGCACTTATCTGACAGGCAATCGCAGTCCAGATGTAGGCGCCGCATCACTTCTTCCTTCTCAGGGGCTGGGGACGGCCCTTTGGAGAGGGCGAAATCCCGAGCAGGCTTTCTGGCGGAGTCTGGGGAGGAACTGGAGCGAGGGAGAACTAGCGGAGAAGAGTTGAGTACTGTGGAGGATTTAAACCTGACACTCAGCAGTCGGACCACAGTGGCTGGTGTTAACGGACGTCCACATATTGATGAGAACTGTGGAGACTCTATACACCCAGAATGCTCTGGGGTAGAACTCGGTAAGAGCGCTGGTGATTCCAGGACCCAGGGGGAGCCCTCTGAGCGGGAGATCACCAGTGTTGCTGGGAAACGAACTTGTTCGGACTCAGGAGACGAGGATGATTCTCCATCGGAGAAGAGGGCGAAGACGTGGTGATGTCACAGCACAACTCACTGGCTCAGAGTCAAACTTGTGTTGAGTTGTTCATCCTTAGACTCTTTTTGGTTTATCATTTCTGAACCaagttctctttttctctttATATGATGTCATGCGTTCTGGGGTCACACCGCAGTGatgacactaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-060929-808 Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human DCAF5 (DDB1 and CUL4 associated factor 5).

Ensembl:

ensembl_id ENSDART00000135804

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013080 lncRNA downstream 86709 36321364 ~ 36322604 (-) False XLOC_006796
TCONS_00013872 lncRNA downstream 483829 35925042 ~ 35925484 (-) True XLOC_006784
TCONS_00013044 lncRNA downstream 881908 35520974 ~ 35527405 (-) True XLOC_006778
TCONS_00013871 lncRNA downstream 1120086 35277858 ~ 35289227 (-) True XLOC_006774
TCONS_00013870 lncRNA downstream 1120203 35248697 ~ 35289110 (-) False XLOC_006774
TCONS_00013088 lncRNA upstream 111309 36530230 ~ 36535072 (-) False XLOC_006800
TCONS_00013091 lncRNA upstream 112639 36531560 ~ 36532726 (-) False XLOC_006800
TCONS_00013096 lncRNA upstream 150026 36568947 ~ 36582281 (-) False XLOC_006803
TCONS_00013099 lncRNA upstream 168849 36587770 ~ 36612159 (-) True XLOC_006804
TCONS_00013101 lncRNA upstream 194241 36613162 ~ 36621925 (-) True XLOC_006805
TCONS_00013078 mRNA downstream 17811 36321088 ~ 36391502 (-) False XLOC_006796
TCONS_00013077 mRNA downstream 17817 36321088 ~ 36391496 (-) False XLOC_006796
TCONS_00013076 mRNA downstream 90005 36311894 ~ 36319308 (-) True XLOC_006795
TCONS_00013075 mRNA downstream 144452 36196778 ~ 36264861 (-) True XLOC_006794
TCONS_00013074 mRNA downstream 224837 36175772 ~ 36184476 (-) True XLOC_006793
TCONS_00013085 mRNA upstream 27266 36446187 ~ 36525982 (-) True XLOC_006799
TCONS_00013087 mRNA upstream 107885 36526806 ~ 36534380 (-) False XLOC_006800
TCONS_00013086 mRNA upstream 107885 36526806 ~ 36534380 (-) False XLOC_006800
TCONS_00013089 mRNA upstream 111309 36530230 ~ 36535128 (-) False XLOC_006800
TCONS_00013092 mRNA upstream 114509 36533430 ~ 36534405 (-) True XLOC_006800
TCONS_00013082 other downstream 9938 36399260 ~ 36399375 (-) True XLOC_006797
TCONS_00013079 other downstream 17822 36321091 ~ 36391491 (-) False XLOC_006796
TCONS_00013081 other downstream 78414 36321431 ~ 36330899 (-) True XLOC_006796
TCONS_00013072 other downstream 267962 36135416 ~ 36141351 (-) True XLOC_006792
TCONS_00013058 other downstream 446847 35962350 ~ 35962466 (-) True XLOC_006785
TCONS_00013090 other upstream 111499 36530420 ~ 36535072 (-) False XLOC_006800
TCONS_00013107 other upstream 338634 36757555 ~ 36761316 (-) True XLOC_006809
TCONS_00013121 other upstream 759681 37178602 ~ 37178716 (-) True XLOC_006819
TCONS_00013139 other upstream 1175594 37594515 ~ 37600539 (-) False XLOC_006831
TCONS_00013140 other upstream 1179790 37598711 ~ 37599245 (-) True XLOC_006831

Expression Profile

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