RNA id: CI01000004_14507781_14513019.mRNA



Basic Information


Item Value
RNA id CI01000004_14507781_14513019.mRNA
length 2117
RNA type mRNA
GC content 0.31
exon number 4
gene id CI01000004_14507781_14513019
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14506560 ~ 14513444 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATAAAAGGAAAAAAGTATCAAACAAAACCATTGTGTGAATTCTGGGCTCAACAACAAAGCAGGAACCAAAATAATACATTTGTGCTACCAGTCCATAAACATAAATGTTTATTATTATTATTCATTATAAATCCCTTTAATATAGAATAAAATCATTATAGTTATTAAATTAATGTTGAATCTATTATGATGGAGGCTGTGTCTGCTACTCATGGAAGAAGTTATGATCACACTACTAACCACTGTGTGAATAACAATATTAAAATAATATTTGGGAAGGGGACACAACTCTATGTACAAGCAAGTGAGTACAACCATTTAAATATTACAACATATAATAATAATAATAATAATAATAGCATTTTATTTTCATAGGATTTGGTATCTAATCTGGTATCTAATCTAAGTCACAAGTAGTGAAATTTAATATTAAATTTACTGTACCACCAAAGTTTTCAGAAGATGTTTTTAAAACCCACTTCATCCACAGACTTTAGTTATGAATCTAATTATTAATAGAATTTACTGTAATGTCAAAGGAAAGAGTTTCCTATGTATTTCTGTGTTGGTGTTTGTAATTGTGTGACTCAAAATACAGACAAACTGATATTTGGGCAAGGCTCTCGGCTCACTGTGTTATCGAGTAAGTTATGGATTCAGTTATTTACAGTTTACTCTAATGGATATTACACACGTTCTTTTCACTAATCCACCAATAGGACAGGTAGTCGTATAGGCCTTACATGAGATTTTCACAGCTCGTTTTATTTAATGTCATTTATTTATTTAAATTAAATCTATGCAATTATTAATTTGACACACATATTTTAACTGCATTACTGAGTTGCTCTAACATCAAAATGAACACTGAAGTTTTGACTCGCCGTTTATTGAAGTATTTATAACACTGACAGTCACTGTGTGAATGACAACTCTGGCAAAATGTTATTTGCGAAGGGAACTCACTTATTTGTACAGACCAGTAAGTAAAACCTTACTTTCTTTTGGAAATAATTCATCGTAACCTCAGATTTAAAAAAACTAAAAAAACAAAATAAGGAAATCAGTTAATTTAATAAAGAAAGACTAGGCCTATCTGCTAGTTCAAATAAATGGACTGAATAAATTTCAACGTTGCACTTGTCCATAGAAAGTTCATAAAAAATGAAAAATCGCTTTAATATAGAAGGGAATCATTATAGTTGATGTAAAATCTAACATGACGGAGGATGTGTCTGCTACTCATGGAAGTTATGATCCCACTACTAACCACTGTGTGAATAACAATATTGATAAAATAATACTTGGGAAGGGGACACAACTCTATGTAGAAGCGAAAGACAGAAAAGCACCACAATTCTACAAATTTAGAGAATCATGTCTGGCAACTGACTTCACGAACCATACAGATGTAGAACCAAGCTATTTTACACCAGTGCGATATACAGGCAAAAACTATGAAAAGTACTACAGCAGCTTTGCCTTGAATATTACAGCTGAAAACTGCAAGGAAACAGATTCAGAGTGTAAAGGTGAATCATCTGGTCAAAATGATATGGAATTAGGTCTCACAAATCCAACAGTCGTTCTTCATCAGTTGGATTTATCACAGTTCCTTCACCGAAGACAACAGAAAAAGCTCACATTTGACCACATTCGAGAGCCGTTAGATCTGCACCGTTGTTGTTAAATGTTGATCAAGGGATTATGTAACCTCCCTCAGTTATGCTATAGTGCTTATGGTTTTAAGAATAATATACTGTCTACACATTTGAATGTAATGTGTTTATATGCTTTTACTGTATAATATGGGCTCAACTATTCTAGGTTAGGATACAATAGAAGTATATGCCACCATTTAGTTGTTTCTAATTTAGCAACTTAGACTTAGTTCGTTTAATTTCTCTTTATTTTAATGATTTCTACATTTATTACCTGTTATTTTGTAAAATTTATTTTTAAATTACTTTGAAGCTGGATTACATCTGAAGAATTCTGTCTATATAGCTTTCATTTTTGCAACATATTTACATACACAATTAAGTTGACTTGTGCTTATTTCTACAATGGCAGACTTTCATTTAATAATCACTGTATTGTGCAAATCATATGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37525 lncRNA upstream 32658 14463206 ~ 14473902 (+) True G33096
TU37537 lncRNA upstream 75326 14430991 ~ 14431234 (+) True G33108
TU37617 lncRNA upstream 140113 14366239 ~ 14366447 (+) True G33181
TU37616 lncRNA upstream 141020 14365319 ~ 14365540 (+) True G33180
TU37585 lncRNA upstream 147582 14268887 ~ 14358978 (+) True G33149
TU38125 lncRNA downstream 15086 14528530 ~ 14528781 (+) True G33644
TU38143 lncRNA downstream 21634 14535078 ~ 14535344 (+) True G33662
TU38444 lncRNA downstream 244688 14758132 ~ 14792115 (+) True G33919
TU38449 lncRNA downstream 254570 14768014 ~ 14808289 (+) True G33924
TU38478 lncRNA downstream 331901 14845345 ~ 14853442 (+) True G33951
CI01000004_14498216_14504721.mRNA mRNA upstream 1405 14498054 ~ 14505155 (+) True CI01000004_14498216_14504721
CI01000004_14448323_14458776.mRNA mRNA upstream 47379 14446505 ~ 14459181 (+) True CI01000004_14448323_14458776
CI01000004_14412728_14424282.mRNA mRNA upstream 81694 14412728 ~ 14424866 (+) True CI01000004_14412728_14424282
CI01000004_14371097_14380914.mRNA mRNA upstream 125646 14370061 ~ 14380914 (+) True CI01000004_14371097_14380914
CI01000004_14283392_14361256.mRNA mRNA upstream 143427 14282136 ~ 14363133 (+) True CI01000004_14283392_14361256
CI01000004_14864427_14865483.mRNA mRNA downstream 350654 14864098 ~ 14865753 (+) True CI01000004_14864427_14865483
CI01000004_14877615_14885956.mRNA mRNA downstream 364016 14877460 ~ 14886499 (+) True CI01000004_14877615_14885956
CI01000004_14889786_14894594.mRNA mRNA downstream 376342 14889786 ~ 14894922 (+) True CI01000004_14889786_14894594
CI01000004_14910312_14915166.mRNA mRNA downstream 396670 14910114 ~ 14915979 (+) True CI01000004_14910312_14915166
CI01000004_14919607_14929407.mRNA mRNA downstream 406031 14919475 ~ 14929407 (+) True CI01000004_14919607_14929407
TU37521 other upstream 469660 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 1850849 12642754 ~ 12655711 (+) True G32314
TU36123 other upstream 2311413 12192130 ~ 12195147 (+) False G31865
TU35811 other upstream 2838901 11664773 ~ 11665473 (+) False G31611
TU38554 other downstream 577800 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU38784 other downstream 1425913 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 1549971 16063415 ~ 16066464 (+) True G33815
TU39001 other downstream 2463884 16977328 ~ 17025469 (+) False G34400

Expression Profile