RNA id: TCONS_00013087


Basic Information

Item Value
RNA id TCONS_00013087
length 4722
RNA type mRNA
GC content 0.40
exon number 6
gene id XLOC_006800
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36526806 ~ 36535128 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGTGGATGTCGTGTGTTTATTGGCCGTCTGAGCCCTCATGCTCGTGAAAGAGATGTGGAGAAGTTCTTCAAAGGCTACGGACGTATCCGAGAGATTAACCTGAAAAACGGGTTTGGCTTTGTGGTGAGTATTAAGACACTTGAGGGTCTTTTTTGCTTGAGACGTGCAAGTGAAGTCAGTGTCTTACTGCCCCCTGctgtctgtttttgtttacaGGAGTTTGACGACTACAGGGATGCAGATGATGCAGTGTATGAACTGAATGGCAAAGAGCTGTGCAGTGAGAGGGTGACCATTGAGCATGCCCGCTCTCGCAGAGGAAGAGGTGGTGGCCCAGGAATGGGAGGTCGTTTCTCTCCACGCTTTGGAGGTTATCGTCAGTCCCGCAGTGGCGGTTCCAGGTATGGACCACCAGTGCGCACAGAGCACAGAATCATAGTGGAGAATCTCTCCTCTCGCATCAGCTGGCAGGACCTGAAGGACTTGATGAGGAAGGTTGGAGAAGTCACTTTTGTGGATGCACACAGGACCAAAAAGAATGAAGGGGTGGTGGAGTTTGCTTCACACAGTGATATGAAGAATGCCATCGAGAAGCTTGATGGAACTGACCTGAACGGGCGCAAACTCAAGTTGTATGAGGATCGCAAGAGGAACCGCAGTAGGAGTCGTTCCCGCAGCAGGAGCAGCTCTCGTTCTCGTTCCCCAAGCCGCAGTCGCAGCCCCGAGCGTGGAAGCAAGCGCTCTCGCAGCCGCTCCCTCAGTCGCACCCCAGAGAAGAAATCCACCAGCAACAGATCTCCTTCCCGCTCTCCAACTCCTCAGAGGAAACAGAGCCGCTCTCGATCTGCCTCCGCAGAGAGTCAGCACTGAAactaaatgtgtatgtgtgtgcgcgtgagagACTGAGCTTTTTCCACTTATTAATGTGGCATATGTCATTGTGCTACTTTAGTGTAAATTACTGAATGTGagttgagtgagtgaatgaatgtgaatgggtgtgtgtgcgAGTGGGTGTGTGTGAAGATGTTTTGGTTTATTTCCAATGCTGAAAAACTGGGTGGGTTTAACTGATAATGGAGTGGGATCAGACTAGAGATATTTTCAGTGTCTTGTTttgatttctattttttatttgatcaatTTCAATACTGGAGTACTTCTGTAGAAATACTTAAATGTGGGTTTTGTTTTTCAAACTCACTTGTTAATTTTTGTTTAGAGTCCATATGCTTGTTCAACAGAAGGATATGCTTGTATATACACCCTGTAATAAAGTATATTGGTATTTGGCAGAGATGTGGATTTAGTTTTTAATACTCTTAAATGTGCACTCCAAAGCTTAATCTACATTCAAGTTTTAAGCATAGTCTGATTATACTGCGAATTACAGGGTGGCTGTGACCCCTCCCCCCACCTCCCTAATTAATGCTTTATCTTTGGTCAGTCCTGGTCTAAATAGTAAGAAAAAGATGCAGATCAGAACatactaaaatattattcattaaataggTAATATAAATGTACTTTTGACCAACTCtataatgaattaaattattgtaaaTGCATAATCGCGGCATTTAATCAAAGCCAATAGACATGGTGTTCGCAAAACACTTATTGTAGATGTTTTTACAAAAAGCCTAAAATTGAAGTAAAATTGGATGCATTGTTTGACTCGGTAACTTCTGGAATGGCTAGTCATTGCATATTGTATTTCAGAATGCACAAACTCTCACAAAACACTGGAAGTTAAATGTTGCACTAATAAAATAGATGTCACTTAACTTAATTCACTAAAGCATGTATTAAACAAAATTACATAGAAAAAGTTGACCCCCTCTGATCTTCAAAGTTTAATTCACACCCTGGGTATACCATCAAATAAACCTATATTGGGGAAATCTACGTCCACTAGGTGGCGCTGCTTCATAGCTGAAGTCTTGTGCCTAAAATCAGACAAATCATCAATTTACGTCTCAATTCAGGTCGAAAGCGGAAAGGAAAATATTGAAGAGTGTTTTAAGAAGTTTGGGGTTTTATTTATTGACTGACTATAAAAATATTGCTTAGTTGCTACATGTCTGCGAATCAATATTTGTCCCAGTGAGGGCCTCAACAGTATAGAACTAGCAGTTATCGACCCAGTCAATGTGCATTGTAAGTAACCTGTATTTTATAAATTGATCTGTGTTGCTATGAGGATCCCGGCAACCACAGATTGTAAAGTATGAATGGGAGGCGATGTTACATCTTCTGCAGTGTCCAAGGACAAAACGGCCTCCCTTTACTGTGTTTCTCGTTTTTATGCTCATAAACTGGTGTCTGCAGTGCACTGCGACGCGCTCGTCCTCAAGGGCAAACAGATAAAATCACACTACAAACAAATAACAAGTGCATCGAGATCAGATTGCTGAGAGCGGTTTGTTCCCCACTGATGAAAATACACGAGTTGTTTGAGAAACACTGAGACAAATAGGGCAGACAGGTGGAGGACAGTTAATTACTGCAGATTGGACTGGAACAGCTTGTCCTTTTGCTTTATCATTATCACTTTGTCAGTGACAAAGTTGAATTGGATCACCTCAGTTTCTagacacaactttttttttaatagattactAAATTTGAGTTGCCAAATCACAATAGGCTTTTATCACATAGGCTACACATGAGGGCTGGTATAGCCCATGTAATGCAACAGACTTGattatgaaaatcatcttttggaagatgtttggacagaactgtgtgtaggtgtagtgtgtcatgttggagtgatataaacacaataagtctctttttttatttaatttcctgaCTTTAGGATCAAAATCCCTCCCATCTTTATGCCCACCgcaatgtgatgtaggagtgcggtttccccacccactgaattgattgacagccacgtattaGCATGTCTTGGTAGTAATGCATATATTCATATCAACaagcaaagcaactgggattaaaagatctgtaaAGCTCGATCAAATTTAATCAACAAtaatttttacaagtttaaaacatgtttaaaacagtgcatgtttgtactgaattaagctgtggtcacactagagtttggaTGTGccaaattctgtcgtacggcccTGCGAAAAGGGACAGGATTAAACAAGCTGATTAGACATAAGAAAGCGAGCGATTGCGCCATGTTtgtaaatttctgtccagagaggtcatgttttgacccTCGTTTGagctcacgcagtcaagtgatacgATTTCGCAAGTCAGAGTTCACTATgattgaactttgcaccgcatcAAACTGCGAAACGTAACGCATGATCCTGCATTTCTGGTATGAGGCATttgcgtgtgtatgaatgtgtctatggggagaaaagtcaagtgtgaccacagctttacagcgattttactgtctttatcaccACGGCCGCATGTCAGTAAgattataaaagaagatgattCAATGCCGGCGCCATGCATTTTGTAATTCTACACATAGGTTTCTGTCAGAATACACACACCGGAGGCGCATGTCGGCGGCTGTCTGCAGCGACCATCCACGACTCAGGACATTGTTTATACttctgccacgccacagagcgccatctgattagttttattttaaatatcatgaatgtgcgcatctggtgtgcgatacttttaactgtcatgtgcgcgccgtgtcgcacCGAGCGGGCATCCGGTGTGTGTGTGACGCCCTttaggcacactctgacaggcacatgggaacggtgggcgggaagagttagcattaaaggcacaggccacaaaaacagctacatcatgttcagagcagaaaattccataTTCTGAAAGGCATAATAAATAAACTGTCATGTGTTTTGAGCttaaactttacaaacacattctggagacaaaaaagactaatattaaatattgaaaaagggttaaaacaggtgccctttaatgaaaatattcaGAAACAACTTTATGATCAGATCTGATTTCACGATATGttttttcacaatgttttttttttttttggctctccAACTGTCTctcttcaataatattttaaagtttaaatgtatttttacatcATAATTAATAAGAACTCAGTTAACAATTAAAGCAGTGCTGTGGATTAACTTTAATCATGACACCAATAAAGGGCCAGCAACTTACATTTTTAAGGTCACCTCGTGCAGgtaaattcaaacaacattcatGAGTGGTGACGACGGAAGGGAAACATTCTGTAAATTGTAATTTCTTTATTGAGTTGTCCAGGGAAATAAATGAAGAAAGGATATAATATAAACCCCAAtggttctttaaaaaataataatttgcttaaaaatcagaaatggctctttgctgaaaaaaggttcccAATACCTGAATTAGAATCTGTTGACAAATATGTTATGTTGGTGAAATATGTTGATCAAATAGTCATGATAAAATGCTGCTGTTATAACATTTGTGTTGCGTGAAAATTATTTGGATGTTTAGAATGCAGCTAGTGTTGGTCAGTTACCAttttatgtgcatatttatttatttcattttaattagtaTGATGTTCAGACATGCgctgtaagtgaattgaacaaactaaattggccgtattgtgtatgtgtgtaaatgagagtgtatggatgtttcccagtactgggttgcagctggaagggtatccactgtgtaaaatatatgctgcataagttgcaagttcattccgct

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7336 Predicted to enable mRNA binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be active in cytoplasm and nucleus. Is expressed in nervous system; otic vesicle; pectoral fin; pharyngeal arch; and solid lens vesicle. Orthologous to human SRSF5 (serine and arginine rich splicing factor 5).

Ensembl:

ensembl_id ENSDART00000181046

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013080 lncRNA downstream 204202 36321364 ~ 36322604 (-) False XLOC_006796
TCONS_00013872 lncRNA downstream 601322 35925042 ~ 35925484 (-) True XLOC_006784
TCONS_00013044 lncRNA downstream 999401 35520974 ~ 35527405 (-) True XLOC_006778
TCONS_00013871 lncRNA downstream 1237579 35277858 ~ 35289227 (-) True XLOC_006774
TCONS_00013870 lncRNA downstream 1237696 35248697 ~ 35289110 (-) False XLOC_006774
TCONS_00013096 lncRNA upstream 34567 36568947 ~ 36582281 (-) False XLOC_006803
TCONS_00013099 lncRNA upstream 53390 36587770 ~ 36612159 (-) True XLOC_006804
TCONS_00013101 lncRNA upstream 78782 36613162 ~ 36621925 (-) True XLOC_006805
TCONS_00013873 lncRNA upstream 461253 36995633 ~ 36997760 (-) True XLOC_006814
TCONS_00013498 lncRNA upstream 475432 37009812 ~ 37012236 (-) True XLOC_006815
TCONS_00013085 mRNA downstream 824 36446187 ~ 36525982 (-) True XLOC_006799
TCONS_00013083 mRNA downstream 87745 36406274 ~ 36439061 (-) False XLOC_006798
TCONS_00013084 mRNA downstream 107885 36409313 ~ 36418921 (-) True XLOC_006798
TCONS_00013078 mRNA downstream 135304 36321088 ~ 36391502 (-) False XLOC_006796
TCONS_00013077 mRNA downstream 135310 36321088 ~ 36391496 (-) False XLOC_006796
TCONS_00013093 mRNA upstream 3046 36537426 ~ 36545258 (-) True XLOC_006801
TCONS_00013094 mRNA upstream 22825 36557205 ~ 36566260 (-) True XLOC_006802
TCONS_00013095 mRNA upstream 34255 36568635 ~ 36579086 (-) False XLOC_006803
TCONS_00013097 mRNA upstream 34818 36569198 ~ 36581875 (-) False XLOC_006803
TCONS_00013098 mRNA upstream 43845 36578225 ~ 36582341 (-) True XLOC_006803
TCONS_00013082 other downstream 127431 36399260 ~ 36399375 (-) True XLOC_006797
TCONS_00013079 other downstream 135315 36321091 ~ 36391491 (-) False XLOC_006796
TCONS_00013081 other downstream 195907 36321431 ~ 36330899 (-) True XLOC_006796
TCONS_00013072 other downstream 385455 36135416 ~ 36141351 (-) True XLOC_006792
TCONS_00013058 other downstream 564340 35962350 ~ 35962466 (-) True XLOC_006785
TCONS_00013107 other upstream 223175 36757555 ~ 36761316 (-) True XLOC_006809
TCONS_00013121 other upstream 644222 37178602 ~ 37178716 (-) True XLOC_006819
TCONS_00013139 other upstream 1060135 37594515 ~ 37600539 (-) False XLOC_006831
TCONS_00013140 other upstream 1064331 37598711 ~ 37599245 (-) True XLOC_006831
TCONS_00013157 other upstream 1116293 37650673 ~ 37656690 (-) False XLOC_006839

Expression Profile

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