RNA id: CI01000004_14910312_14915166.mRNA



Basic Information


Item Value
RNA id CI01000004_14910312_14915166.mRNA
length 2250
RNA type mRNA
GC content 0.45
exon number 3
gene id CI01000004_14910312_14915166
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14910114 ~ 14915979 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTTAAAAGAGCTTGCTCAGCCTCATGTACGCTCAGTGGGCTTCCAGGCACATGAGGCACAGTGGCTGAGTAACAACAAAGGAAAAGGGGGGAAAAAACCCACAAGGGATCTTAGTGGCTGTGGAACATCTGATTTACTTCAAAATAATCTGATTACATGCAGAGACAGACTAACATACACCAGCATTAAACATCAGAATGTATGTGCCCGGGGCCGTGTTGGCCCTCTGCCTGCCCTGCTTTTTGAGTGGGAACGTGTTTGGTTATGAATATGGAGAGGATTACTCTGATTCCTACTATAATGAAATCTCCAATGGTGACCGCCTGAAAACAGGAGCTACGCAGATTCCCTGTCCGCCGCAAGACTTCTCACGCTGGGACAAACTGTTCATCATGCTGGAGGACTCTCAGATGAAGCAAGACATGTTCTTGCAGCAGTGTGAGGACATGGTTAAGGCGGAGATGGACACCATACGGAAGGAGCTCCATAAGCTTAACAACAACAAAGCGTGCGTCCAGCTCAGAGAGGCTGCAGATACGTATCAAGCCCAAAACAATGAGACGTTGCAGCAGCTCATTCAGTTCAGCAGGAACCAGGCCTCCCGTCTCACCAAACTGGAGAGCAACTCACTGCTAGGAGCAAGTCTGGGGCAAGTGGCCATGAAGTCATTCTCTGCTTATCCAAAGGAACAAGAAGCAAGCAATGCAGATGGCGGGAAGCTGGAGAGAGCGCTAATGGCCACCGCTGCAGATCTCCAAAGGGTACATGTCCAGCTGGCCCTTTTCCAAAGAGCAACGGCACACCGTTATCTGCCCTCAGGCTGTGAAATGGCTTTATTATTCCCAATGCGCTCCAAGCATATCTTTGCAGAGGTATCACCCTCCATGTCCATGTCCCTACGATCATTCACCATCTGTCTGTGGGCCAAAGTGACTCAGTCTCTAAATAAAACAGTGCTTTTCTCTTACGGACCCAAAAAAAACCCTCAAGAGCTCCAGCTTCTCTTGGCAAGGCGCTCGGTGCTCCTCACGGTGGGCGGTGAGACCCATCTAGTGGAAGCCCACAGCGTAGTAACAGATGGCCAGTGGGGACACTTCTGTGCAGCTTGGAGCTCGGAGCAGGGGCTTGCCACTTTATGGGCAAATGGAGAGAACGTTGCCAGAGTGCCTGGAGTAGCCGAGGGACACGTATTGTCCGGTGACGGCTTCATTCTGCTCGGGCAAGAGCGCAGCCGCTCGGGTGTCTACAGAGATCTGGATTCATCAGTTGCCTTCACTGGAAAAATGACAGGGGTTAACATGTGGGACCACGTGCTGGAAGCAGAAAGGATTAAAGAGTACGCCAATCACGATGGATCCTGTGATTGCCGTGGGAATGTGATTGGATGGGGTGTTTCAGAGATCATTCCACATGGTGGCGCTCAATATATCAACTGAGACTGCACCAATAATATCTATCACTATAGAATGTTTTATATTATATTGAATATTATCACTGATTTTGTAATTACCTTCTTTCTCATTCCAAATAGAAAGCACTACTTAATAAAGGGATAATTGATCCAAAATAAATTTCTGTTATTGTTTACTCTGTCATTGATACACAGGGCAACTTTTTGAGCAATGTTGCGGGACAATTTTGCCGAGCGATGATGCATTGAGAATGGGCAACAAATTTGGATACTTTAAGATTGAAATGTGTTGCCCATTCTCAATGGGAAAGCGCCCAAGCAACATCGCTCAGCAAAACTGCCCGGCAACATTATGACTTTGTGACTTCTGTGGAGCACAAAAAAAAAAGATACTTTGTGTTTTTGTCTATACATTGAAAGTCAATGGGGTGCAATGGACTTTCACTGTATAGCAAAAACAGCTGAAATAATCTTCAAAACATATTATTTACTACAGAGCCCCTAAGGTACGGAGCCCCTAAAGGGACATGGTGGTGGAAAAAAATATGAGATAAGAGGAAAATAATAAGTCAACCCAAAGTTTCTCAGGAGAACACAAAACATTTGCACGAGAACGCAAAAGCATTGCCAAATAATTTTTCCTCCCATCTCATATTTTTCTTCTTCACCATGTCCCTTTAGGGGCTCTGTAATACGGAGGGTGAGTAAATGAAGACTGAATTTTTATTTTTGTATGACCTCTCCTTAAAACACTGTACAAAAAACCAATAAGAATAGTTTAATATTGTGTCTTCTTTTTTTATTTTAGCACATTAAGGAGTAAATCATCAACATGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU38478 lncRNA upstream 56672 14845345 ~ 14853442 (+) True G33951
TU38449 lncRNA upstream 101825 14768014 ~ 14808289 (+) True G33924
TU38444 lncRNA upstream 117999 14758132 ~ 14792115 (+) True G33919
TU38143 lncRNA upstream 374770 14535078 ~ 14535344 (+) True G33662
TU38125 lncRNA upstream 381333 14528530 ~ 14528781 (+) True G33644
TU38544 lncRNA downstream 120038 15036017 ~ 15036233 (+) True G34004
TU38549 lncRNA downstream 129263 15045242 ~ 15045445 (+) True G34009
TU38559 lncRNA downstream 178126 15094105 ~ 15094375 (+) True G34017
TU38569 lncRNA downstream 187371 15103350 ~ 15103577 (+) True G34027
TU38570 lncRNA downstream 187987 15103966 ~ 15104168 (+) True G34028
CI01000004_14889786_14894594.mRNA mRNA upstream 15192 14889786 ~ 14894922 (+) True CI01000004_14889786_14894594
CI01000004_14877615_14885956.mRNA mRNA upstream 23615 14877460 ~ 14886499 (+) True CI01000004_14877615_14885956
CI01000004_14864427_14865483.mRNA mRNA upstream 44361 14864098 ~ 14865753 (+) True CI01000004_14864427_14865483
CI01000004_14507781_14513019.mRNA mRNA upstream 396670 14506560 ~ 14513444 (+) True CI01000004_14507781_14513019
CI01000004_14498216_14504721.mRNA mRNA upstream 404959 14498054 ~ 14505155 (+) True CI01000004_14498216_14504721
CI01000004_14919607_14929407.mRNA mRNA downstream 3496 14919475 ~ 14929407 (+) True CI01000004_14919607_14929407
CI01000004_14934532_14938094.mRNA mRNA downstream 17895 14933874 ~ 14938094 (+) True CI01000004_14934532_14938094
CI01000004_15010164_15028433.mRNA mRNA downstream 94185 15010164 ~ 15028708 (+) True CI01000004_15010164_15028433
CI01000004_15048166_15051524.mRNA mRNA downstream 132187 15048166 ~ 15052817 (+) True CI01000004_15048166_15051524
CI01000004_15056504_15062261.mRNA mRNA downstream 139943 15055922 ~ 15063180 (+) True CI01000004_15056504_15062261
TU37521 other upstream 873214 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 2254403 12642754 ~ 12655711 (+) True G32314
TU36123 other upstream 2714967 12192130 ~ 12195147 (+) False G31865
TU35811 other upstream 3242455 11664773 ~ 11665473 (+) False G31611
TU38554 other downstream 175265 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU38784 other downstream 1023378 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 1147436 16063415 ~ 16066464 (+) True G33815
TU39001 other downstream 2061349 16977328 ~ 17025469 (+) False G34400

Expression Profile