RNA id: CI01000004_15091390_15096502.mRNA



Basic Information


Item Value
RNA id CI01000004_15091390_15096502.mRNA
length 1299
RNA type mRNA
GC content 0.45
exon number 5
gene id CI01000004_15091390_15096502
representative False

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15091200 ~ 15097173 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATAAAAACCTCCGCTCCCACAGCGTGCAGTCAAACACGAGCCGAGACAGTATCGTAGCGACAAGTATCGGAGCAGTGCGAGAGAGAAACCACTCGAAATCTCTGTGGATTACTACCGCCATATTCTCTGGAATTATATTATTTGGGGTAATTTCTATTTCTGGATTATAACATAATTTAATGACAAACATGACTCTGGAGGAAGTTGTTGGATGCAGCAGCACTGACAGAAAAATGGAAACAGTAAGTGAAGCTCTCGAGGAGCTGCTAGTGGCTGCACAACGACAAAACTGTCTGACAGTTGGAGTCTACGAGTCTGCACAACTCATGAATGTGGATCCAGACAGCGTGGTCCTCTGCGTTTTAGCGACTGATGAGGAGGACGAAAATGATGTTGCGCTTCAGATCCACTTCACGCTCATCCAAGCCTTCTGCTGTGACATCGACATCAACATTGTGCGCGTCTCCGGCATGAGGCGTTTGGCACAGGTTCTCGGGGAGCCTCTCTCCACTGACAGCAACGCCAATGAACCAAGAGACCTCCACTGCATACTTGTAACTACTATATTTTATGACTTTTCTGTGATGCCGTCTCACACTCAGGAAACACCATATCTGTCTGACTGAGGGTTACCGTTGGTAACAGAGATTCATTCATTAGTCACGTTAAACTGAAGTTGGGAACACATGGACTCCCTCCTGTGACTGATTGATTAGCAGAAGTTAAGTGCACCGGAGCCAGTGGGAAGTCAGGCACGCGCCCAGCAGCTCTGAGTCTGTAATCTGACAGCACACATTGCACAAAGACAATGCCACACACAAAGCCCTGACTACAAAACTTAAAGAAAGCATGTCCACTTCACAAAGACACAGGGAACGTTTATCAGCTTTAAACAGTGTCACGTGCTCCTAATCTTCATTTTGTGAAAATGGCTGTTTGCATTCTCCAAATGCAGGACCTGATCAAACCAACTGGTTTTTCATTTGAAGTTGTATTGTCACTTCCACTGATAAGCGGATCTAACTTCAGTGTTACCCGAAACGAATCAATCAAGCAAACATTTCTAAAGCCACGTATCATGCTCATATGTGAAAGCAATTATTAGGCTCCTGTTTCCTCAGCAGAAATCAATCAGTCTGGGGCAATCAGCAGTGGCGGAGAGAGACGACCGCTAATGCCAAACCTAATATTTCTGCAGGGCTCGGGGTCAGAACCACAGTGGCAGAAAGAAGGAGTTTTAAGAGCTACTCAAAACACATGGCCTACAATGAACAAAAGTTTTAATTATAGACAATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU38549 lncRNA upstream 45755 15045242 ~ 15045445 (+) True G34009
TU38544 lncRNA upstream 54967 15036017 ~ 15036233 (+) True G34004
TU38478 lncRNA upstream 237758 14845345 ~ 14853442 (+) True G33951
TU38449 lncRNA upstream 282911 14768014 ~ 14808289 (+) True G33924
TU38444 lncRNA upstream 299085 14758132 ~ 14792115 (+) True G33919
TU38569 lncRNA downstream 6177 15103350 ~ 15103577 (+) True G34027
TU38570 lncRNA downstream 6793 15103966 ~ 15104168 (+) True G34028
TU38573 lncRNA downstream 9249 15106422 ~ 15106699 (+) True G34031
TU38575 lncRNA downstream 9563 15106736 ~ 15156513 (+) False G34032
TU38574 lncRNA downstream 56889 15154062 ~ 15160060 (+) True G34032
CI01000004_15056504_15062261.mRNA mRNA upstream 28020 15055922 ~ 15063180 (+) True CI01000004_15056504_15062261
CI01000004_15048166_15051524.mRNA mRNA upstream 38383 15048166 ~ 15052817 (+) True CI01000004_15048166_15051524
CI01000004_15010164_15028433.mRNA mRNA upstream 62492 15010164 ~ 15028708 (+) True CI01000004_15010164_15028433
CI01000004_14934532_14938094.mRNA mRNA upstream 153106 14933874 ~ 14938094 (+) True CI01000004_14934532_14938094
CI01000004_14919607_14929407.mRNA mRNA upstream 161793 14919475 ~ 14929407 (+) True CI01000004_14919607_14929407
CI01000004_15110181_15110483.mRNA mRNA downstream 12425 15109598 ~ 15110625 (+) True CI01000004_15110181_15110483
CI01000004_15126731_15131774.mRNA mRNA downstream 29511 15126684 ~ 15132238 (+) True CI01000004_15126731_15131774
CI01000004_15200553_15209521.mRNA mRNA downstream 101069 15198242 ~ 15209824 (+) True CI01000004_15200553_15209521
CI01000004_15229290_15233374.mRNA mRNA downstream 131603 15228776 ~ 15234597 (+) True CI01000004_15229290_15233374
CI01000004_15237719_15253901.mRNA mRNA downstream 140546 15237719 ~ 15254158 (+) True CI01000004_15237719_15253901
TU37521 other upstream 1054300 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 2435489 12642754 ~ 12655711 (+) True G32314
TU36123 other upstream 2896053 12192130 ~ 12195147 (+) False G31865
TU35811 other upstream 3423541 11664773 ~ 11665473 (+) False G31611
TU38784 other downstream 842184 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 966242 16063415 ~ 16066464 (+) True G33815
TU39001 other downstream 1880155 16977328 ~ 17025469 (+) False G34400

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031300 False 1390 mRNA 0.46 4 NC_007113.7 36939749 ~ 36941988 (+)