RNA id: CI01000004_15429682_15430354.mRNA


Basic Information

Item Value
RNA id CI01000004_15429682_15430354.mRNA
length 2363
RNA type mRNA
GC content 0.35
exon number 2
gene id CI01000004_15429682_15430354
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15428518 ~ 15431049 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACTTAAAACAAAGGAAAGATATTCATGTGTTCTCATCATCCATTTTACAGAAGCATTAAGGAGTGAATAACTGCTTATACACATGAATAGAACAGCGTGGCTCTTATAGGAAATAACAAGGTACTCCTTAAAGGTGTATGTGACTACAACAAATTAAAAACAGGATAAGGAATCAAGGAGAAACGAAGTAAAACACTTTCTTCTTAACACTAACCCTTTAACATTAGCCAAAAATAGAACTTTTTTGTTGTTATTAAAAACCAAACAAGAAAGCACAGCCCCGGTGAGAAAAAGTAACTAAGTGACGCAATTAGTTCCTTTTTTAGGGAGTAACGCAATATTGTAATGCATTACTTTTAAAAGTAACTTTCCCCAACACTGCTGAGTAAGGCATTATGGGTCTTTATAGCGATTTATGAACCACAATGCCATGAGCACATGGAAGAAATGTCTCCAGGGACATCCTGGATGTTTTCTAAAACAGTAATGTGTAATTATTTCTTAGAGCACTGATAAGGTCCTTAAAATAACAATGTAGATAGATATGCTGACGTAGCTTCCATTCACATCCAGAGCTCTAGAGTCAGCCCAGCCTCAGTGAACAAAACACCCTGACTCCACATACACTTCCCTCACTGCCACACCAGACCGCAGAAGATCAGTGTAGTCTGTGTCCTACATCACCTTTCTCAGCATGGCCAGATCCAGCTCAGCCCAGAACACCTGTAACTGGATTATGGCTGTCCTCACGTTGTGGTCTATGATCTCTCTGATCGTCATTGTGGTTTGGGTCACCTGGCCTCCGTTGGCTAGCCTTACACAATGCAGAGCAGCACATCAGGCCTTAATTGAAAAGATGGAGGGAGCTAAAGTGATAAAGGAAAAGGAGCAAGATGGCTTGAAATCCACCCTGGAGCTGAGCTCTAAAAACCAGACCAGACTGCAAGAAGAGCTGGAAAGTATTCTAGAGAGCCAGAGGGAAACCAACGCATCTCTAACAGAGAGTCTGCAACTGCAAATGATCCTAAAGGAAAATGTAACAGCTTTGGAAAATCAAAGACTCAGGCACCACAGTGAACACGCAAGACTTTTTTCTGAGCTGGCTCAACAAGAGGGTAGGAGAGCCAAATATGGGAATATTTTTAAAAATGATAAAGTTGGTGCAACCAAAGACGACATCTTTTACATGAGAGCATAATTATCTGTTTTGAGATGAGGAGTATATATACACTGTAAAAAATGAATGTGATTTTAACAGTAAAATATTGTAAAAACGTTACGGAAAAAAAATGTAAATAGGTTAACAGTAAGTTCCAGTACTATATACAGGGAAAAACTGTAAAAGCTCCTACCAGACATTTTATGTAATTTTCACAGTAAAATGCTGTAAATTTTACAATTTCTAGAAGTAAAAAAGAACAAATCAATGTATAATTTACAGTCAAAAACTGTAAACTGATATTCCCACAATTCCCTGTGTGACACTCCACATTTGAAAGTATTTTGTTTAAATAATCATGTTTCTTAATAGTTTTTGTTATCAGTTATGTACATTAGGGTTTTATGTTACATCTTCTGTTGTTTAATGAATGTTTATTGCATTATGTAAGTGTTGTGGGTTACCATGATGGTGTTTTGCGTTTGCGTGAATGACTCTGTGCACCCTCTTTATATTAGTATATACTTCAGCTCGTGGAAAAGCTACTTGTGATGAACTCTGATTCTTCATGTGGCTTTCTCTTTTACCACCTGCATTATTATGGTGGTTGTCAGTATATGTTAAAGGTACAAAACAGATTTTACTAGTAGTGTGCATTGTTGAATTTACTTGTTNNNNNNNNNNTTGAAAGTATTTTGTTTAAATAATCATGTTTCTTAATAGTTTTTGTTATCAGTTATGTACATTAGGGTTTTATGTTACATCTTCTGTTGTTTAATGAATGTTTATTGCATTATGTAAGTGTTGTGGGTTACCATGATGGTGTTTTGCGTTTGCGTGAATGACTCTGTGCACCCTCTTTATATTAGTATATACTTCAGCTCGTGGAAAAGCTACTTGTGATGAACTCTGATTCTTCATGTGGCTTTCTCTTTTACCACCTGCATTATTATGGTGGTTGTCAGTATATGTTAAAGGTACAAAACAGATTTTACTAGTAGTGTGCATTGTTGAATTTACTTGTTTACATTCAAATTTTCTTGTTTGTAAATTACAGTTTTATACTGTAAAATTGACAGTTTGTTCTGTAAATGTGTTTACAGTTTTTTTTCTGTATTTTTTACAAAATTATTCTGGCAACCACAGCTGCCAAAATTATTTTGTAAAAACTACGGAATATTTTTTACAGTGTAGGAAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39429 lncRNA downstream 29741 15398571 ~ 15398777 (-) True G34734
TU39428 lncRNA downstream 30510 15397806 ~ 15398008 (-) True G34733
TU39319 lncRNA downstream 110296 15316241 ~ 15318222 (-) True G34634
TU39296 lncRNA downstream 135853 15286323 ~ 15292665 (-) True G34611
TU39410 lncRNA downstream 148376 15279943 ~ 15280142 (-) True G34717
TU39475 lncRNA upstream 245523 15676572 ~ 15682517 (-) True G34768
TU39298 lncRNA upstream 262041 15693090 ~ 15694289 (-) True G34613
TU39280 lncRNA upstream 265956 15697005 ~ 15700776 (-) True G34595
TU39325 lncRNA upstream 317600 15748649 ~ 15748929 (-) True G34640
TU39293 lncRNA upstream 332193 15763242 ~ 15765773 (-) True G34608
CI01000004_15416876_15425066.mRNA mRNA downstream 3354 15416876 ~ 15425164 (-) True CI01000004_15416876_15425066
CI01000004_15370117_15389832.mRNA mRNA downstream 38686 15369754 ~ 15389832 (-) True CI01000004_15370117_15389832
CI01000004_15326982_15360355.mRNA mRNA downstream 68163 15326859 ~ 15360355 (-) True CI01000004_15326982_15360355
CI01000004_15300222_15308848.mRNA mRNA downstream 119577 15299660 ~ 15308941 (-) True CI01000004_15300222_15308848
CI01000004_15255165_15256033.mRNA mRNA downstream 170291 15254943 ~ 15258227 (-) True CI01000004_15255165_15256033
CI01000004_15434959_15441538.mRNA mRNA upstream 3830 15434879 ~ 15441538 (-) True CI01000004_15434959_15441538
CI01000004_15456870_15468826.mRNA mRNA upstream 25454 15456503 ~ 15468826 (-) True CI01000004_15456870_15468826
CI01000004_15483948_15538159.mRNA mRNA upstream 52899 15483948 ~ 15538159 (-) True CI01000004_15483948_15538159
CI01000004_15561061_15573201.mRNA mRNA upstream 128860 15559909 ~ 15573201 (-) True CI01000004_15561061_15573201
CI01000004_15581505_15586825.mRNA mRNA upstream 150341 15581390 ~ 15586825 (-) True CI01000004_15581505_15586825
TU39411 other downstream 146869 15281016 ~ 15281649 (-) True G34718
TU39323 other downstream 338160 15087179 ~ 15090358 (-) True G34638
TU39354 other downstream 375743 15051176 ~ 15052775 (-) False G34668
TU39355 other downstream 376649 15051176 ~ 15051869 (-) True G34668
TU39317 other downstream 403297 15011361 ~ 15025221 (-) True G34632
TU39318 other upstream 356337 15787386 ~ 15787897 (-) True G34633
TU39241 other upstream 401524 15833158 ~ 15833275 (-) True G34569
TU39503 other upstream 429564 15860613 ~ 15863748 (-) True G34796
TU39656 other upstream 970696 16401745 ~ 16421506 (-) True G34934
TU39713 other upstream 1071676 16502725 ~ 16515974 (-) True G34982

Expression Profile