RNA id: CI01000004_15694735_15698103.mRNA



Basic Information


Item Value
RNA id CI01000004_15694735_15698103.mRNA
length 1206
RNA type mRNA
GC content 0.43
exon number 6
gene id CI01000004_15694735_15698103
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15694735 ~ 15698421 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGCCGCAGTAACGCTCCAGTGTGGATCACGTGGCGGAGGCTCGGGGTTTGTGGGTCGTGAGCTGACACGTTTGCTGAAAAGCAAAGGTCATGAAATCACAATCATTTCCAGGCAGCCTGGTCCAGGACAAATAACATGGGCTGATGTAGAGTCAGGAGGCCTCCCGCCATGTGAGGGCGCTGTGAATCTAGCAGGGGAGAGTATTATGAACCCTTTGAGATGCCGAATAAACACTACCAGAATTCTTGCCCAAGCTATTGCTGCGTCACCTTCTCCACCACATTCATGGGTGCTTGTTACAGGAGTAGCGTGTTATAAACCCAGTCTTCAAACCCAGTACTCTGAAGAGAGCGACTGGACACCATTTGACTTCCTGTCTCGCCTGGTGAAAGAGTGGGAGGGGGCAGGACAACTTCCTGAAAACAGTGCTAAGAAAACAAGACGAGTGATCATCAGACCAGGTGCGGTGTTAGGGCGTGACGGTGGTGCCATGAAACAGATGATGATTCCCTTTTGGCTTGGCCTGGGTGGGACACTTGGCTCGGGACGACAGCCCTTCCCTTGGATCCATGTTTCAGACCTTGCTGGCATCATTGCTCATACCTTGGAGCCCCATGAAGAACATTCATCCACAGAGCCAGATGTATTTAATGGAGTCGCGCCTGCAATGAATACAAATTTTGAATTCACTAAAGAGTTGGGCAGGGCTCTAAAAAGACCTACTATCTTCCCTGTGCCGGGCTTTTTCTTGGATGTTTTCCTCGGTTCTGAGAGAGCTGTTATCCTCACACAAGGCCAGAAAGTGGTGCCCAAGAGAACTCTTGAGTCAGGGTTTAACTTTCAATACCCAGATCTTACTTCTGCTTTAAAAGAAATCGTTGGATAATATGAGTGATCAGTCAAAATAGAGACGTGAGAAAATTCTTTGGTTACACTTTATTTTAAGGTGACATAGTTACTCAAATACTCAAATAAGTACTGAGTAATATTAATTAACTACATGTACTTACTATAGAGTTATGGTTAGGGTTTGGTTTAGGGTTAGTTACTTGTAATTATGCATAATTTACTGGTATTACTATAATAAGTATATGTTGTAACGTGTAACTACAGCATATTAAAATAAAGTGTTACCGATTCTTTTATGCATACTAGTGCAGTTATAACACACATTTTTTTAAATTTGAATTAAGCATATAAAAAA

Function


GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K07071 K07071; uncharacterized protein

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU38407 lncRNA upstream 72415 15620079 ~ 15622320 (+) True G33882
TU38359 lncRNA upstream 100360 15586066 ~ 15594375 (+) True G33834
TU38701 lncRNA upstream 137951 15556405 ~ 15556784 (+) True G34142
TU38700 lncRNA upstream 138522 15555855 ~ 15556213 (+) True G34141
TU38660 lncRNA upstream 212420 15481920 ~ 15482315 (+) True G34101
TU38742 lncRNA downstream 50228 15748649 ~ 15748926 (+) True G34181
TU38745 lncRNA downstream 53242 15751663 ~ 15752548 (+) True G34183
TU38748 lncRNA downstream 57614 15756035 ~ 15756391 (+) True G34186
TU38750 lncRNA downstream 69331 15767752 ~ 15767991 (+) True G34188
TU38755 lncRNA downstream 77838 15776259 ~ 15776513 (+) True G34192
CI01000004_15687242_15691238.mRNA mRNA upstream 3458 15685262 ~ 15691277 (+) True CI01000004_15687242_15691238
CI01000004_15645965_15650241.mRNA mRNA upstream 44461 15645965 ~ 15650274 (+) True CI01000004_15645965_15650241
CI01000004_15631508_15632389.mRNA mRNA upstream 62332 15631430 ~ 15632403 (+) True CI01000004_15631508_15632389
CI01000004_15444403_15453408.mRNA mRNA upstream 240558 15444403 ~ 15454177 (+) True CI01000004_15444403_15453408
CI01000004_15400244_15414139.mRNA mRNA upstream 280359 15400244 ~ 15414376 (+) True CI01000004_15400244_15414139
CI01000004_15711867_15722470.mRNA mRNA downstream 13446 15711867 ~ 15722582 (+) True CI01000004_15711867_15722470
CI01000004_15787382_15803133.mRNA mRNA downstream 88961 15787382 ~ 15803144 (+) True CI01000004_15787382_15803133
CI01000004_15825817_15827475.mRNA mRNA downstream 127396 15825817 ~ 15827603 (+) True CI01000004_15825817_15827475
CI01000004_15859240_15861471.mRNA mRNA downstream 160819 15859240 ~ 15863449 (+) True CI01000004_15859240_15861471
CI01000004_15867404_15875293.mRNA mRNA downstream 168564 15866985 ~ 15875304 (+) True CI01000004_15867404_15875293
TU38554 other upstream 602766 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU37521 other upstream 1657835 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 3039024 12642754 ~ 12655711 (+) True G32314
TU36123 other upstream 3499588 12192130 ~ 12195147 (+) False G31865
TU35813 other upstream 4027157 11664773 ~ 11665473 (+) True G31611
TU38784 other downstream 240936 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 364994 16063415 ~ 16066464 (+) True G33815
TU39001 other downstream 1278907 16977328 ~ 17025469 (+) False G34400

Expression Profile