RNA id: CI01000004_15751774_15753519.mRNA


Basic Information

Item Value
RNA id CI01000004_15751774_15753519.mRNA
length 2951
RNA type mRNA
GC content 0.39
exon number 4
gene id CI01000004_15751774_15753519
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15751733 ~ 15755397 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACCCTTGTGTTCTTCTCTGCTCTTCTATTTAATACTCCATTTAATAATATACCTTGCTAATAAGTATGGCTTCAAAAGACTTTGAGTATAAAAGATGAGTTGAATGAATCTTATGATATTTTATGATACTTTTATGCTTCTATACTTTTTATGCACCCCCCTCCCCCCTTTTTTTGTTAATTTAAGTAATTTTGGAGCTCAACATCTCCTTTCCCTAATGATTTTTATTATACGGAAAAGAGTGGCTATTCTTCAGAATTTCAGAATTTCTCCTTTAGTTTTCCACAGAAGAAAGAAAAACGGTATGGAACGTGATGGTGAGTACATGATGTCAGCATTCATATTTGGTGGATTATTTCAGAAAAGTCAAAGCAGGTAAGAGCAGGTAGTAAGGTGGGTGCCAAGATGTGGAAGTGTGTGATACACTTCCTCCACTCCTTCCTGCAATCTTCTTGCATGCTGTAGCCTGCAAGTTAGGGAAAACAACCTTGAACATTCATTTAAAATAAAGATATGAAGAAATTGGTGTGTTGAAATATTGGGAGGAGGAAGAGGAGGATGGTGGGGTGGAGCAAATTTGAACACAATATGTCAGAAGACTAGCAATTTATAACAGAAAGAAGCAGTAGGGCAAGTTACAATTAAAGATCACTGAACAACAATAAGAACTTAAGTAATTTAGGATAAGCTATGTGAAAGTTTATCTGAGAGACAGGGGAAAGAAATAGAGAGACCAACTTGGAGACCACACAACCTAACCAGGTCCATCTGGTCACTTCAGGGAAAATACATTTCAGCCATTCGGATCTAATCAAGTGTATTGGTGAGTTACAAGAAAACCCTCTTTGATTTTCAAACCAGGAATACATTACAGTCCATCTTATTTCTTATATTTTCCATCTCCAGTTTGTCCTTTCAGGCCACTTTCTGTTTGATGCAACTTTGACCAGTTTCTCAATTTCATCTTTGCTGTTCAGAACCAATTGTAGTGATCACAATCAGACTGGACAATCTTATCTTCTTACACTGTAGGGATTGCAATACTGAATAGGTTCACAGTTCAATTTGTGAATATGTTTTTTTTTTAAATGCTTTGCTGTTCTTTTAACTTGACTTTAAATATGGTATTCTTTTCTTGACAATTGCTGTAAAATAAAGTTTATATAAGAGAACTTTTGGGATGAGGGTGAGGACGTGATCCTCTGATTGGTGGATATTACAGCATCTGAGTGCCTTTTTGTGATCAAGACCGCAGAGCAAGTTGTAGCACGTCTTTTCCATGTTGTTTTTCATTGATGGCAGATTACTGGCTGAATTTCAATAATTACATGGTTGCTGAGAGCCCATCCTTGATGCTGGCTCATACTTTATTTGCCCCTGAAGGAAACATTATTAAAGAAAAAATCCTCAGTAATTCATAGTACATCATCTGAATTGGATAACATGGTCAAATATAATTGTTTTTCTTTTTCTCGACTGATCATGTGCTAATAATAGTTTCAAGTTATCAAGTAAAAAGTCCAGTGTAAAGTTTAGATTTTTTCAGATATTTTTCAAGATTTTTATAGGCTACATTTTACAATTTCTTCTTTCGACTTCAAAATGTCATGCTTAATTCAATGTGTTACTTGCCATTTACTAGTAAAGTGAAAATAGTTTATAAAAAATAAAAAACAGCTGACAAATAAATAAATATATAAATAAATGATCTATACTAATCTAGTTTGCCGGTCTTAGCTGATTTTAGGATAGTCTGTCGGCTGGTTTTAAAAAAAAATTTAAACATTTTTTTAGCAGGGTTATAGGGTTATGAAAGCATTTCCAGCTTCAAATAACATTGCTTTCTGATTCCATCAGTTCTTCTGACGCCTTCCTGATGGAATCAGGAAATCAGAGCACCTCCACTGTGAACATGACAACAATCAATTCTGAGGATAAGAGCATTGTGGGTAACAGTATTTCTGTTGCCTTTGGGGCCCTCATCCTCAGCATCGTCTTCCTCCTGGGTGTTCCTGGCAACCTCTTCATTATCTGGAGCATCCTGGCACGTGCCCGCAAATGGTCGGTCACTACCCTGCTCATCCTCAACCTGGCGTGTGTACACGGTTGTCTGATGTGTCTGACTATTTTCTTTATAATTTACCTAGCCAAGCAGAGCTGGATATTTGGAGGTGTCATGTGCAAGATGCTTTTCTATTTGTGCAACACAAACATGTACGCTTCTATTATGATCATTACGCTGATGAGTCTACACAGACTGGTGGCAGTGGTGTGGCCCAAATACTTGAAAGCCTGTACTCGTAGACGGACGGTATTACTTGTGCTCGGGGGCCTGTGGATTGTCGTATTTCTTTTGGCTCTTCCTGCTTTGAGATTCAGAAAAACGATGGACTATAGAAACGGACGCACATTGTGTGAAACTAATCACAGCAGTTTACAGCATGTGATACTCCAGTACACACTTGAGACAGTGGTGGGCTTCCTGGTACCGTATGTGATCATAGTCAGCAGTTATGCGTGTATCCTTCGCCGCCTCAGACAGACCATGTTCAAGAGAAGGATACGAAGCGAGAACCTCATTCAAGCCATCATTGTGGCATTCTGCATTTTTTGGCTTCCTTATCATATTATTAATGTAGTGCAAGTGGTGGCAGCACTTATACAAGATGGATCAACCAAAAAAAGATTGGATCATATCTGGCAGTCCAGTCGTGCGGTTACATCCGCTCTGGCTTTTATCAGTAGTTGTGCCAATCCTATCCTCTACACCTTTGCCGGACGCTCCTACATCAAAGCTGATGGCCTGGCATTCATGGCCAGACTCTTTGAGGGCACGGTCCTGGACTATGGTGCCCGAAAAAGACCAAAAGACCAGACTTCAAATCTCACAGAGTGCAGAAACATATGAAAAAATCTTGGACAATTTTTTTTGATAGTGTAGGGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39325 lncRNA downstream 2804 15748649 ~ 15748929 (-) True G34640
TU39280 lncRNA downstream 50957 15697005 ~ 15700776 (-) True G34595
TU39298 lncRNA downstream 57444 15693090 ~ 15694289 (-) True G34613
TU39475 lncRNA downstream 69216 15676572 ~ 15682517 (-) True G34768
TU39429 lncRNA downstream 352956 15398571 ~ 15398777 (-) True G34734
TU39293 lncRNA upstream 7845 15763242 ~ 15765773 (-) True G34608
TU39483 lncRNA upstream 11912 15767309 ~ 15768270 (-) True G34776
TU39485 lncRNA upstream 16762 15772159 ~ 15772396 (-) True G34778
TU39305 lncRNA upstream 24279 15779676 ~ 15780614 (-) True G34620
TU39486 lncRNA upstream 40613 15796010 ~ 15796390 (-) True G34779
CI01000004_15726420_15733105.mRNA mRNA downstream 18628 15726052 ~ 15733105 (-) True CI01000004_15726420_15733105
CI01000004_15702447_15708692.mRNA mRNA downstream 43041 15702371 ~ 15708692 (-) True CI01000004_15702447_15708692
CI01000004_15653837_15673610.mRNA mRNA downstream 78123 15653725 ~ 15673610 (-) True CI01000004_15653837_15673610
CI01000004_15581505_15586825.mRNA mRNA downstream 164908 15581390 ~ 15586825 (-) True CI01000004_15581505_15586825
CI01000004_15561061_15573201.mRNA mRNA downstream 178532 15559909 ~ 15573201 (-) True CI01000004_15561061_15573201
CI01000004_15760841_15761919.mRNA mRNA upstream 5393 15760790 ~ 15761987 (-) True CI01000004_15760841_15761919
CI01000004_15827737_15828938.mRNA mRNA upstream 72271 15827668 ~ 15828960 (-) True CI01000004_15827737_15828938
CI01000004_15832789_15836192.mRNA mRNA upstream 77187 15832584 ~ 15836204 (-) False CI01000004_15832789_15836192
CI01000004_15836936_15841048.mRNA mRNA upstream 81065 15836462 ~ 15841048 (-) False CI01000004_15836936_15841048
CI01000004_15881212_15881809.mRNA mRNA upstream 125466 15880863 ~ 15883692 (-) False CI01000004_15881212_15881809
TU39411 other downstream 470084 15281016 ~ 15281649 (-) True G34718
TU39323 other downstream 661375 15087179 ~ 15090358 (-) True G34638
TU39354 other downstream 698958 15051176 ~ 15052775 (-) False G34668
TU39355 other downstream 699864 15051176 ~ 15051869 (-) True G34668
TU39317 other downstream 726512 15011361 ~ 15025221 (-) True G34632
TU39318 other upstream 31989 15787386 ~ 15787897 (-) True G34633
TU39241 other upstream 77176 15833158 ~ 15833275 (-) True G34569
TU39503 other upstream 105216 15860613 ~ 15863748 (-) True G34796
TU39656 other upstream 646348 16401745 ~ 16421506 (-) True G34934
TU39713 other upstream 747328 16502725 ~ 16515974 (-) True G34982

Expression Profile