RNA id: TU28220



Basic Information


Item Value
RNA id TU28220
length 244
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G25018
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1053742 ~ 1053985 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTACATTTTGTGCGCAAAAACAAAACAAAAATTACGACTTTCCCTCTTCCCTGTCAGTCTGTTAAGCAGCTAGCGCAGTGCTGCGTTTCCGTGTTTACGTCCGAACTGCGGCTCATTATTGGCCGGCTCCTGCTTCAGCATTACACGCATGTCTTGTGCTGCTCACGTGAAGAGGCGTTGGCCAATACTGAGTTACCGTTCAGACGTAGAACCTGGAAGCTGCAACGAAAATAGCATAGCAGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU28214 lncRNA downstream 5719 1047741 ~ 1048023 (-) True G25012
TU28211 lncRNA downstream 7809 1045577 ~ 1045933 (-) True G25009
TU28203 lncRNA downstream 33773 1019750 ~ 1019969 (-) True G25001
TU28184 lncRNA downstream 78132 974644 ~ 975610 (-) True G24984
TU28182 lncRNA downstream 80428 973038 ~ 973314 (-) True G24983
TU28221 lncRNA upstream 3695 1057680 ~ 1057909 (-) True G25019
TU28222 lncRNA upstream 9575 1063560 ~ 1063845 (-) True G25020
TU28225 lncRNA upstream 23313 1077298 ~ 1077457 (-) True G25022
TU28246 lncRNA upstream 35402 1089387 ~ 1089596 (-) True G25033
TU28266 lncRNA upstream 46049 1100034 ~ 1100233 (-) True G25050
CI01000004_00976733_00985797.mRNA mRNA downstream 66348 976415 ~ 987394 (-) True CI01000004_00976733_00985797
CI01000004_00888465_00928759.mRNA mRNA downstream 124226 888273 ~ 929516 (-) True CI01000004_00888465_00928759
CI01000004_00833574_00834659.mRNA mRNA downstream 217875 832330 ~ 835867 (-) True CI01000004_00833574_00834659
CI01000004_00812006_00813189.mRNA mRNA downstream 240474 811577 ~ 813268 (-) True CI01000004_00812006_00813189
CI01000004_00794261_00800431.mRNA mRNA downstream 253308 794113 ~ 800434 (-) True CI01000004_00794261_00800431
CI01000004_01151429_01155980.mRNA mRNA upstream 96924 1150909 ~ 1156040 (-) True CI01000004_01151429_01155980
CI01000004_01163187_01164466.mRNA mRNA upstream 108958 1162943 ~ 1164466 (-) True CI01000004_01163187_01164466
CI01000004_01199771_01204393.mRNA mRNA upstream 145506 1199491 ~ 1206249 (-) True CI01000004_01199771_01204393
CI01000004_01230991_01235864.mRNA mRNA upstream 176927 1230912 ~ 1235864 (-) False CI01000004_01230991_01235864
CI01000004_01252844_01260204.mRNA mRNA upstream 198667 1252652 ~ 1260354 (-) True CI01000004_01252844_01260204
TU29027 other upstream 719055 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU30225 other upstream 2220448 3274433 ~ 3275721 (-) True G26788
TU31341 other upstream 4124242 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 4126008 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 4566398 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369

Expression Profile