RNA id: TU28221



Basic Information


Item Value
RNA id TU28221
length 230
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G25019
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1057680 ~ 1057909 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTGCTGGGCGAGTGCTGTCCGAACCTGGAATAATTAACCCTTTAAAACTGGATGTGTCGTCGGCGACACATCCAACCAAGCTGTATTCATGTTACCGTAACTCTTGAAATTTTTGCGCTATTGTAATAATTCAAATTGCTACAGACAATAGACAACACAGGCTTTTCGGCAATATATGGGTTATTATGGTAATTTCGTGCCTTTCGTCAGCCACTTTCAGGGAGAGCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU28220 lncRNA downstream 3695 1053742 ~ 1053985 (-) True G25018
TU28214 lncRNA downstream 9657 1047741 ~ 1048023 (-) True G25012
TU28211 lncRNA downstream 11747 1045577 ~ 1045933 (-) True G25009
TU28203 lncRNA downstream 37711 1019750 ~ 1019969 (-) True G25001
TU28184 lncRNA downstream 82070 974644 ~ 975610 (-) True G24984
TU28222 lncRNA upstream 5651 1063560 ~ 1063845 (-) True G25020
TU28225 lncRNA upstream 19389 1077298 ~ 1077457 (-) True G25022
TU28246 lncRNA upstream 31478 1089387 ~ 1089596 (-) True G25033
TU28266 lncRNA upstream 42125 1100034 ~ 1100233 (-) True G25050
TU28271 lncRNA upstream 48796 1106705 ~ 1106961 (-) True G25055
CI01000004_00976733_00985797.mRNA mRNA downstream 70286 976415 ~ 987394 (-) True CI01000004_00976733_00985797
CI01000004_00888465_00928759.mRNA mRNA downstream 128164 888273 ~ 929516 (-) True CI01000004_00888465_00928759
CI01000004_00833574_00834659.mRNA mRNA downstream 221813 832330 ~ 835867 (-) True CI01000004_00833574_00834659
CI01000004_00812006_00813189.mRNA mRNA downstream 244412 811577 ~ 813268 (-) True CI01000004_00812006_00813189
CI01000004_00794261_00800431.mRNA mRNA downstream 257246 794113 ~ 800434 (-) True CI01000004_00794261_00800431
CI01000004_01151429_01155980.mRNA mRNA upstream 93000 1150909 ~ 1156040 (-) True CI01000004_01151429_01155980
CI01000004_01163187_01164466.mRNA mRNA upstream 105034 1162943 ~ 1164466 (-) True CI01000004_01163187_01164466
CI01000004_01199771_01204393.mRNA mRNA upstream 141582 1199491 ~ 1206249 (-) True CI01000004_01199771_01204393
CI01000004_01230991_01235864.mRNA mRNA upstream 173003 1230912 ~ 1235864 (-) False CI01000004_01230991_01235864
CI01000004_01252844_01260204.mRNA mRNA upstream 194743 1252652 ~ 1260354 (-) True CI01000004_01252844_01260204
TU29027 other upstream 715131 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU30225 other upstream 2216524 3274433 ~ 3275721 (-) True G26788
TU31341 other upstream 4120318 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 4122084 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 4562474 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369

Expression Profile