Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU28416 |
| length | 2612 |
| RNA type | TUCP |
| GC content | 0.51 |
| exon number | 15 |
| gene id | G25187 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 1604542 ~ 1616470 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU28422 | lncRNA | upstream | 18922 | 1585266 ~ 1585620 (+) | True | G25192 |
| TU28456 | lncRNA | upstream | 33664 | 1570619 ~ 1570878 (+) | True | G25226 |
| TU28431 | lncRNA | upstream | 114665 | 1465948 ~ 1489877 (+) | True | G25201 |
| TU28452 | lncRNA | upstream | 159146 | 1445065 ~ 1445396 (+) | True | G25222 |
| TU28366 | lncRNA | upstream | 292951 | 1311043 ~ 1311591 (+) | True | G25143 |
| TU28472 | lncRNA | downstream | 87787 | 1704257 ~ 1704558 (+) | True | G25242 |
| TU28479 | lncRNA | downstream | 140520 | 1757912 ~ 1759222 (+) | True | G25249 |
| TU28478 | lncRNA | downstream | 144060 | 1760530 ~ 1762263 (+) | True | G25248 |
| TU28483 | lncRNA | downstream | 153355 | 1769825 ~ 1770177 (+) | True | G25253 |
| TU28484 | lncRNA | downstream | 153925 | 1770395 ~ 1770704 (+) | True | G25254 |
| CI01000004_01592461_01602968.mRNA | mRNA | upstream | 1574 | 1592356 ~ 1602968 (+) | True | CI01000004_01592461_01602968 |
| CI01000004_01578642_01584658.mRNA | mRNA | upstream | 19734 | 1578566 ~ 1584808 (+) | True | CI01000004_01578642_01584658 |
| CI01000004_01501609_01545725.mRNA | mRNA | upstream | 58423 | 1501609 ~ 1546119 (+) | True | CI01000004_01501609_01545725 |
| CI01000004_01446583_01461259.mRNA | mRNA | upstream | 142626 | 1446203 ~ 1461916 (+) | False | CI01000004_01446583_01461259 |
| CI01000004_01426795_01429440.mRNA | mRNA | upstream | 175102 | 1426795 ~ 1429440 (+) | True | CI01000004_01426795_01429440 |
| CI01000004_01623427_01625278.mRNA | mRNA | downstream | 6957 | 1623427 ~ 1625340 (+) | True | CI01000004_01623427_01625278 |
| CI01000004_01670419_01699238.mRNA | mRNA | downstream | 53949 | 1670419 ~ 1699238 (+) | True | CI01000004_01670419_01699238 |
| CI01000004_01715623_01744133.mRNA | mRNA | downstream | 99153 | 1715623 ~ 1744133 (+) | True | CI01000004_01715623_01744133 |
| CI01000004_01750322_01754593.mRNA | mRNA | downstream | 133852 | 1750322 ~ 1755323 (+) | True | CI01000004_01750322_01754593 |
| CI01000004_01757017_01757201.mRNA | mRNA | downstream | 140547 | 1757017 ~ 1757864 (+) | False | CI01000004_01757017_01757201 |
| TU28341 | other | upstream | 256368 | 1347470 ~ 1348174 (+) | True | G25120 |
| TU28378 | other | upstream | 270553 | 1332465 ~ 1333989 (+) | False | CI01000004_01332533_01345585 |
| TU27514 | other | upstream | 1132696 | 467843 ~ 471846 (+) | True | CI01000004_00467911_00469949 |
| TU28515 | other | downstream | 247689 | 1864159 ~ 1873358 (+) | True | G25282 |
| TU28564 | other | downstream | 466587 | 2083057 ~ 2085707 (+) | True | G25329 |
| TU29214 | other | downstream | 931605 | 2548075 ~ 2573049 (+) | True | G25882 |
| TU29329 | other | downstream | 1120066 | 2736536 ~ 2736768 (+) | True | G25992 |
| TU29335 | other | downstream | 1141986 | 2758456 ~ 2758938 (+) | True | CI01000004_02745885_02768971 |
