RNA id: TU28996



Basic Information


Item Value
RNA id TU28996
length 816
lncRNA type intronic
GC content 0.38
exon number 1
gene id G25689
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1683373 ~ 1684639 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AATTATTGGCACCCTTGGTAAATATGATCAAAGATGACTATAAAAATAAATCTGCATTGTTTATCCTTTTGATCTTTAATTAATAAAATTAGCAAAAATCTAACCTTTCATTGAAGGAAAAGAATTGAAAGTGGGGGGAAAATCACATTATGAAATAAATGTTTTTCTCCAAAACATGTTGGCCACAATTATTGGCACCCTTTTATTCAATACTTTTTGCAACCTCCTTTTGCAAAGATAACAGCTCTGAGTCTTCACCTATAATGCCTGATGAGTTTGGAGAACACCTGACAAGAGATCAGAGACCATTCCTTCATACAGAATCTCTACAGATCCTTCAGATTCCCAGCTCCATTTTGATGTTTGTTTTGGATCATTGTCCTGATGGAAGATCCAACCACGGCCCATTATTGGATTTCTAGCAGAAGCGGTCAGGTTTTGATTTTTTATCTGTTGGTATTTGATAGAATCCATGATACCATGTATCTGAACAAGATGTCCAGGACCTCCAGCAGAAAAGTAGGCCCACAACATTAAAGATCCAGCAGTATATTTAACCGTGGGCATGGGGTACTTTTTATCCATGTGTGCACCAAACCCATCTGGTGGGTTTGCTGCCAAAAAGCTCTTTTTTTAGTTTCATCTGACCATAGAAGCCAGTCCTGTTTGAAGTTCCAGTTGTGTCTGACAACTGAATATGCTGGAGATTGTTTCTGGATGAGCGCAGAGGATTTTTCTTGAAACCCTCCTGAACAACTTGTGGGGACGTAGGTGCTGTTTGATCATTTTTTTTAGGCTTTCTGAGACTCAAGACTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU28990 lncRNA downstream 1294 1681971 ~ 1682530 (-) True G25688
TU28844 lncRNA downstream 13842 1629346 ~ 1669982 (-) True G25559
TU28914 lncRNA downstream 19771 1649988 ~ 1664053 (-) True G25625
TU28855 lncRNA downstream 80533 1602784 ~ 1603291 (-) True G25569
TU28903 lncRNA downstream 87811 1592380 ~ 1596013 (-) True G25615
TU28987 lncRNA upstream 533 1685172 ~ 1686208 (-) True G25687
TU28972 lncRNA upstream 4720 1689359 ~ 1690837 (-) True G25672
TU29001 lncRNA upstream 6655 1691294 ~ 1692061 (-) True G25690
TU29011 lncRNA upstream 43893 1728532 ~ 1730623 (-) True G25700
TU29025 lncRNA upstream 68600 1753239 ~ 1753460 (-) True G25712
CI01000004_01626984_01627238.mRNA mRNA downstream 56586 1626216 ~ 1627238 (-) True CI01000004_01626984_01627238
CI01000004_01605140_01622364.mRNA mRNA downstream 61460 1604552 ~ 1622364 (-) True CI01000004_01605140_01622364
CI01000004_01554696_01564701.mRNA mRNA downstream 119123 1554656 ~ 1564701 (-) True CI01000004_01554696_01564701
CI01000004_01440447_01443088.mRNA mRNA downstream 240532 1439771 ~ 1443292 (-) True CI01000004_01440447_01443088
CI01000004_01404265_01425424.mRNA mRNA downstream 258400 1404265 ~ 1425424 (-) True CI01000004_01404265_01425424
CI01000004_01758554_01762415.mRNA mRNA upstream 73783 1758422 ~ 1762415 (-) True CI01000004_01758554_01762415
CI01000004_01773383_01774888.mRNA mRNA upstream 88289 1772928 ~ 1774942 (-) False CI01000004_01773383_01774888
CI01000004_01814534_01821755.mRNA mRNA upstream 129143 1813782 ~ 1821755 (-) True CI01000004_01814534_01821755
CI01000004_01833090_01839923.mRNA mRNA upstream 148375 1833014 ~ 1839923 (-) True CI01000004_01833090_01839923
CI01000004_01853673_01854481.mRNA mRNA upstream 168549 1853188 ~ 1855232 (-) True CI01000004_01853673_01854481
TU29027 other upstream 88401 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU30225 other upstream 1589794 3274433 ~ 3275721 (-) True G26788
TU31341 other upstream 3493588 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 3495354 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 3935744 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369

Expression Profile


TU28996 Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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TU28996 Expression in each Bioproject

Bar chart with 42 bars.
TU28996 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 500.
End of interactive chart.