RNA id: TU28579


Basic Information

Item Value
RNA id TU28579
length 221
lncRNA type antisense_over
GC content 0.30
exon number 1
gene id G25344
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1955385 ~ 1955605 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAACTGTATAACTGTGCTATGTACAAAGAGAATCACAATGCTGAACAAACATTTTCAGTACCAACTTTTGGATTTGAAAAAAAAAAAGCGTATTTGCATATTTAGAAACAAATTTTATTCTCCTTTGTTGGCATAGGTTTATAAATGAATTATGTTACAAATCTTGTAAAATGTGCCACTTCTGGCATTTTGCCAGTTAATCGACATGTGTAAATTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU28572 lncRNA upstream 5252 1945926 ~ 1950133 (+) True G25337
TU28484 lncRNA upstream 184681 1770395 ~ 1770704 (+) True G25254
TU28483 lncRNA upstream 185208 1769825 ~ 1770177 (+) True G25253
TU28478 lncRNA upstream 193122 1760530 ~ 1762263 (+) True G25248
TU28479 lncRNA upstream 196163 1757912 ~ 1759222 (+) True G25249
TU28580 lncRNA downstream 537 1956142 ~ 1956492 (+) True G25345
TU28559 lncRNA downstream 1037 1956642 ~ 1957261 (+) True G25324
TU28540 lncRNA downstream 3048 1958653 ~ 1959840 (+) True G25305
TU28532 lncRNA downstream 23125 1978730 ~ 2027792 (+) True G25297
TU28565 lncRNA downstream 117673 2073278 ~ 2073486 (+) False CI01000004_02068075_02072887
CI01000004_01937296_01943730.mRNA mRNA upstream 11655 1937296 ~ 1943730 (+) True CI01000004_01937296_01943730
CI01000004_01917089_01920203.mRNA mRNA upstream 34680 1915626 ~ 1920705 (+) True CI01000004_01917089_01920203
CI01000004_01883020_01908403.mRNA mRNA upstream 46751 1883020 ~ 1908634 (+) True CI01000004_01883020_01908403
CI01000004_01867166_01868986.mRNA mRNA upstream 86399 1867166 ~ 1868986 (+) False CI01000004_01867166_01868986
CI01000004_01855598_01856473.mRNA mRNA upstream 98861 1855351 ~ 1856524 (+) True CI01000004_01855598_01856473
CI01000004_01961480_01979407.mRNA mRNA downstream 4450 1960055 ~ 1979465 (+) False CI01000004_01961480_01979407
CI01000004_01999847_02001406.mRNA mRNA downstream 44242 1999847 ~ 2002779 (+) True CI01000004_01999847_02001406
CI01000004_02004004_02012588.mRNA mRNA downstream 47266 2002871 ~ 2013414 (+) True CI01000004_02004004_02012588
CI01000004_02014703_02018248.mRNA mRNA downstream 58995 2014600 ~ 2018466 (+) True CI01000004_02014703_02018248
CI01000004_02033826_02057420.mRNA mRNA downstream 77398 2033003 ~ 2057653 (+) True CI01000004_02033826_02057420
TU28515 other upstream 82027 1864159 ~ 1873358 (+) True G25282
TU28416 other upstream 338915 1604542 ~ 1616470 (+) True G25187
TU28341 other upstream 607211 1347470 ~ 1348174 (+) True G25120
TU28378 other upstream 621396 1332465 ~ 1333989 (+) False CI01000004_01332533_01345585
TU27514 other upstream 1483539 467843 ~ 471846 (+) True CI01000004_00467911_00469949
TU28564 other downstream 127452 2083057 ~ 2085707 (+) True G25329
TU29214 other downstream 592470 2548075 ~ 2573049 (+) True G25882
TU29329 other downstream 780931 2736536 ~ 2736768 (+) True G25992
TU29335 other downstream 802851 2758456 ~ 2758938 (+) True CI01000004_02745885_02768971
TU29632 other downstream 1553412 3509017 ~ 3522393 (+) True G26245