Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU28532 |
| length | 2233 |
| lncRNA type | read_through |
| GC content | 0.34 |
| exon number | 2 |
| gene id | G25297 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 1978730 ~ 2027792 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU28540 | lncRNA | upstream | 17671 | 1958653 ~ 1959840 (+) | True | G25305 |
| TU28559 | lncRNA | upstream | 21469 | 1956642 ~ 1957261 (+) | True | G25324 |
| TU28580 | lncRNA | upstream | 22238 | 1956142 ~ 1956492 (+) | True | G25345 |
| TU28579 | lncRNA | upstream | 23125 | 1955385 ~ 1955605 (+) | True | G25344 |
| TU28572 | lncRNA | upstream | 28597 | 1945926 ~ 1950133 (+) | True | G25337 |
| TU28565 | lncRNA | downstream | 45486 | 2073278 ~ 2073486 (+) | False | CI01000004_02068075_02072887 |
| TU28547 | lncRNA | downstream | 45930 | 2073722 ~ 2074081 (+) | True | CI01000004_02068075_02072887 |
| TU28567 | lncRNA | downstream | 47127 | 2074919 ~ 2081442 (+) | True | G25332 |
| TU28593 | lncRNA | downstream | 57967 | 2085759 ~ 2122591 (+) | True | G25358 |
| TU28560 | lncRNA | downstream | 111126 | 2138918 ~ 2139139 (+) | True | G25325 |
| CI01000004_01937296_01943730.mRNA | mRNA | upstream | 35000 | 1937296 ~ 1943730 (+) | True | CI01000004_01937296_01943730 |
| CI01000004_01917089_01920203.mRNA | mRNA | upstream | 58025 | 1915626 ~ 1920705 (+) | True | CI01000004_01917089_01920203 |
| CI01000004_01883020_01908403.mRNA | mRNA | upstream | 70096 | 1883020 ~ 1908634 (+) | True | CI01000004_01883020_01908403 |
| CI01000004_01867166_01868986.mRNA | mRNA | upstream | 109744 | 1867166 ~ 1868986 (+) | False | CI01000004_01867166_01868986 |
| CI01000004_01855598_01856473.mRNA | mRNA | upstream | 122206 | 1855351 ~ 1856524 (+) | True | CI01000004_01855598_01856473 |
| CI01000004_02033826_02057420.mRNA | mRNA | downstream | 5211 | 2033003 ~ 2057653 (+) | True | CI01000004_02033826_02057420 |
| CI01000004_02068075_02072887.mRNA | mRNA | downstream | 40166 | 2067958 ~ 2074061 (+) | False | CI01000004_02068075_02072887 |
| CI01000004_02116310_02120268.mRNA | mRNA | downstream | 88145 | 2115937 ~ 2120360 (+) | True | CI01000004_02116310_02120268 |
| CI01000004_02126757_02136937.mRNA | mRNA | downstream | 98674 | 2126466 ~ 2137348 (+) | True | CI01000004_02126757_02136937 |
| CI01000004_02143355_02186281.mRNA | mRNA | downstream | 114884 | 2142676 ~ 2186771 (+) | True | CI01000004_02143355_02186281 |
| TU28515 | other | upstream | 105372 | 1864159 ~ 1873358 (+) | True | G25282 |
| TU28416 | other | upstream | 362260 | 1604542 ~ 1616470 (+) | True | G25187 |
| TU28341 | other | upstream | 630556 | 1347470 ~ 1348174 (+) | True | G25120 |
| TU28378 | other | upstream | 644741 | 1332465 ~ 1333989 (+) | False | CI01000004_01332533_01345585 |
| TU27514 | other | upstream | 1506884 | 467843 ~ 471846 (+) | True | CI01000004_00467911_00469949 |
| TU28564 | other | downstream | 55265 | 2083057 ~ 2085707 (+) | True | G25329 |
| TU29214 | other | downstream | 520283 | 2548075 ~ 2573049 (+) | True | G25882 |
| TU29329 | other | downstream | 708744 | 2736536 ~ 2736768 (+) | True | G25992 |
| TU29335 | other | downstream | 730664 | 2758456 ~ 2758938 (+) | True | CI01000004_02745885_02768971 |
| TU29632 | other | downstream | 1481225 | 3509017 ~ 3522393 (+) | True | G26245 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00030587 | False | 2749 | mRNA | 0.38 | 3 | NC_007113.7 | 10147103 ~ 10151839 (+) |
| rainbow trout (Oncorhynchus mykiss) | TU86119 | True | 205 | lncRNA | 0.40 | 1 | NC_048565.1 | 70068453 ~ 70068657 (+) |
| eurasian perch (Perca fluviatilis) | TU130193 | True | 725 | lncRNA | 0.36 | 2 | NC_053120.1 | 18782433 ~ 18859463 (-) |
| striped catfish (Pangasianodon hypophthalmus) | TU86119 | False | 1827 | lncRNA | 0.37 | 2 | NC_047598.1 | 28104546 ~ 28111472 (-) |
| bowfin (Amia calva) | TU13131 | True | 232 | lncRNA | 0.46 | 2 | CM030122.1 | 3518888 ~ 3519591 (+) |
| tiger barb (Puntius tetrazona) | TU13131 | False | 2048 | TUCP | 0.38 | 7 | NC_056700.1 | 2617268 ~ 2669943 (+) |
| tiger barb (Puntius tetrazona) | TU130193 | True | 716 | lncRNA | 0.38 | 2 | NC_056710.1 | 13360314 ~ 13361050 (+) |
