RNA id: TU28976


Basic Information

Item Value
RNA id TU28976
length 294
lncRNA type antisense_over
GC content 0.32
exon number 1
gene id G25676
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2073733 ~ 2074026 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAGGTAGAAATACAATAGTATAATGTCTATACATTGCATTTATGAAATCTACGATGCATCACCCTAAAGTACTTCGTAACATCACATTAGGCCACAGATGTAGGTCCAATGATCCATAAAAAAAAAGAATATCAGAAGTACTACATGTAAACAAACACAAGACTTAAAAACAGATAGCACTTATGCCAACAAACAAAATAACAAATATAGCATCTTATTAATAAACTTCACCTTAAAGGGTTAGTTCACCCAAAAATGAAAATAATGTCATTTATCACTCACCCTCATGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28935 lncRNA downstream 55124 2016257 ~ 2018609 (-) False G25640
TU28936 lncRNA downstream 55124 2016257 ~ 2018609 (-) True G25640
TU28939 lncRNA downstream 129622 1937199 ~ 1944111 (-) True G25642
TU29061 lncRNA downstream 163210 1910290 ~ 1910523 (-) True G25744
TU28966 lncRNA downstream 166192 1905313 ~ 1907541 (-) True G25666
TU28957 lncRNA upstream 41428 2115454 ~ 2123244 (-) True G25657
TU28956 lncRNA upstream 65358 2139384 ~ 2140890 (-) True CI01000004_02137991_02139934
TU28960 lncRNA upstream 120381 2194407 ~ 2195234 (-) True G25660
TU28948 lncRNA upstream 164003 2238029 ~ 2240154 (-) True G25648
TU29192 lncRNA upstream 333058 2407084 ~ 2407355 (-) True G25862
CI01000004_02066165_02067630.mRNA mRNA downstream 5835 2066165 ~ 2067898 (-) True CI01000004_02066165_02067630
CI01000004_02027672_02032165.mRNA mRNA downstream 41568 2027425 ~ 2032165 (-) True CI01000004_02027672_02032165
CI01000004_02019772_02021213.mRNA mRNA downstream 52520 2019639 ~ 2021213 (-) True CI01000004_02019772_02021213
CI01000004_01987895_01997457.mRNA mRNA downstream 76276 1986588 ~ 1997457 (-) True CI01000004_01987895_01997457
CI01000004_01946043_01954044.mRNA mRNA downstream 116964 1945784 ~ 1956769 (-) True CI01000004_01946043_01954044
CI01000004_02074726_02085013.mRNA mRNA upstream 459 2074485 ~ 2085104 (-) True CI01000004_02074726_02085013
CI01000004_02137991_02139934.mRNA mRNA upstream 63340 2137366 ~ 2139934 (-) False CI01000004_02137991_02139934
CI01000004_02198207_02227474.mRNA mRNA upstream 123558 2197584 ~ 2227474 (-) True CI01000004_02198207_02227474
CI01000004_02245903_02355814.mRNA mRNA upstream 171877 2245903 ~ 2356190 (-) True CI01000004_02245903_02355814
CI01000004_02458156_02458869.mRNA mRNA upstream 383769 2457795 ~ 2458962 (-) True CI01000004_02458156_02458869
TU29027 other downstream 298792 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU30225 other upstream 1200407 3274433 ~ 3275721 (-) True G26788
TU31341 other upstream 3104201 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 3105967 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 3546357 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU33056 other upstream 4460801 6534827 ~ 6545572 (-) True G29204

Expression Profile