RNA id: TCONS_00013118


Basic Information

Item Value
RNA id TCONS_00013118
length 506
RNA type mRNA
GC content 0.52
exon number 4
gene id XLOC_006816
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 37075322 ~ 37127970 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGAGAGAAATGTATACCACAGCTTCCAGTTTGTGAGgagagcgagtgtgtgtgagATCAGCTACAGCCATTCAAACATGCTAACGCTAACACGAGAGAGCCATGGAGCCTCACCAGTTTGCGAGGTGAGGAAGCTGAAAGAGACTCTGGTGACCGTACAGCAGCTGGATAAAAACATGAGCAATCTCCGTACCTGGCTTTCCCGTGTCGAAAGTGAACTGGCCAAACCCGTCATCTACAGCATCTGCCACAACGAGGAGATCCAGCGCAAACTAGCAGAGCATCAGGACTTGCAGAGAGATATTGAACAGCACACAGAGGGTGTAGCGTCTGTTCTGACACTGTGTGACGTTTTGCTGCATGATGCGGACGCTTGTGGGAGTGATGGAGAGAACGACTCCATTCAGCAGACCACACTCAGCCTGGACCGCCGCTGGAGGAATATATGTGCCATGTCTATGGAGAGGAGAATGAGGATTGAGGAGACATGGCGCCTATGGTGCAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071218-5 Predicted to enable actin filament binding activity. Predicted to be located in membrane and nuclear envelope. Predicted to be integral component of membrane. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Is expressed in heart; neural keel; primary neuron hindbrain; primary neurons; and shield. Human ortholog(s) of this gene implicated in autosomal dominant Emery-Dreifuss muscular dystrophy 5. Orthologous to human SYNE2 (spectrin repeat containing nuclear envelope protein 2).

Ensembl:

ensembl_id ENSDART00000136750

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013498 lncRNA downstream 93582 37009812 ~ 37012236 (-) True XLOC_006815
TCONS_00013873 lncRNA downstream 108058 36995633 ~ 36997760 (-) True XLOC_006814
TCONS_00013101 lncRNA downstream 483893 36613162 ~ 36621925 (-) True XLOC_006805
TCONS_00013099 lncRNA downstream 493659 36587770 ~ 36612159 (-) True XLOC_006804
TCONS_00013096 lncRNA downstream 523537 36568947 ~ 36582281 (-) False XLOC_006803
TCONS_00013499 lncRNA upstream 225 37110212 ~ 37110536 (-) True XLOC_006817
TCONS_00013136 lncRNA upstream 418174 37528161 ~ 37535327 (-) False XLOC_006829
TCONS_00013135 lncRNA upstream 418174 37528161 ~ 37535424 (-) False XLOC_006829
TCONS_00013874 lncRNA upstream 418174 37528161 ~ 37535785 (-) True XLOC_006829
TCONS_00013142 lncRNA upstream 497070 37607057 ~ 37608372 (-) True XLOC_006832
TCONS_00013117 mRNA downstream 2692 37093426 ~ 37103126 (-) False XLOC_006816
TCONS_00013116 mRNA downstream 3296 37090682 ~ 37102522 (-) False XLOC_006816
TCONS_00013113 mRNA downstream 194700 36868365 ~ 36911118 (-) True XLOC_006813
TCONS_00013111 mRNA downstream 242779 36846789 ~ 36863039 (-) False XLOC_006812
TCONS_00013112 mRNA downstream 242800 36846922 ~ 36863018 (-) True XLOC_006812
TCONS_00013120 mRNA upstream 61989 37171976 ~ 37180815 (-) True XLOC_006818
TCONS_00013122 mRNA upstream 76316 37186303 ~ 37189560 (-) True XLOC_006820
TCONS_00013123 mRNA upstream 89311 37199298 ~ 37200120 (-) True XLOC_006821
TCONS_00013124 mRNA upstream 98473 37208460 ~ 37210369 (-) True XLOC_006822
TCONS_00013125 mRNA upstream 117063 37227050 ~ 37229245 (-) True XLOC_006823
TCONS_00013107 other downstream 344502 36757555 ~ 36761316 (-) True XLOC_006809
TCONS_00013090 other downstream 570746 36530420 ~ 36535072 (-) False XLOC_006800
TCONS_00013082 other downstream 706443 36399260 ~ 36399375 (-) True XLOC_006797
TCONS_00013079 other downstream 714327 36321091 ~ 36391491 (-) False XLOC_006796
TCONS_00013121 other upstream 68615 37178602 ~ 37178716 (-) True XLOC_006819
TCONS_00013139 other upstream 484528 37594515 ~ 37600539 (-) False XLOC_006831
TCONS_00013140 other upstream 488724 37598711 ~ 37599245 (-) True XLOC_006831
TCONS_00013157 other upstream 540686 37650673 ~ 37656690 (-) False XLOC_006839
TCONS_00013167 other upstream 1743150 38853137 ~ 38853252 (-) True XLOC_006846

Expression Profile

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