RNA id: TU29932


Basic Information

Item Value
RNA id TU29932
length 217
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G26541
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2451869 ~ 2452085 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATTACTTAAAGCTCATATTTTAAGGTATCGCAAACAGCATGCGTACAGTTTTCTATTGACATTCTTAAACATTCCGAGGTTTGATATTTTCTGATAATGACTGTCGTCAATAACAACGAAGCTGTATAGCAAACTGCTGTATAACAAACCGACTCACTGGCGCCATCTTGCGTCCGCTTAGCGACTGTATTGAAAATGACTACTCGTGTTGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29929 lncRNA downstream 6057 2445605 ~ 2445812 (-) True G26538
TU29920 lncRNA downstream 33213 2416891 ~ 2418656 (-) True G26529
TU29192 lncRNA downstream 44514 2407084 ~ 2407355 (-) True G25862
TU28948 lncRNA downstream 211715 2238029 ~ 2240154 (-) True G25648
TU28960 lncRNA downstream 256635 2194407 ~ 2195234 (-) True G25660
TU29935 lncRNA upstream 4326 2456411 ~ 2456716 (-) True G26544
TU29967 lncRNA upstream 32147 2484232 ~ 2485163 (-) True G26568
TU29948 lncRNA upstream 172534 2624619 ~ 2629707 (-) True G26550
TU30008 lncRNA upstream 218228 2670313 ~ 2671760 (-) True G26609
TU30037 lncRNA upstream 278838 2730923 ~ 2731238 (-) True G26635
CI01000004_02245903_02355814.mRNA mRNA downstream 95679 2245903 ~ 2356190 (-) True CI01000004_02245903_02355814
CI01000004_02198207_02227474.mRNA mRNA downstream 224395 2197584 ~ 2227474 (-) True CI01000004_02198207_02227474
CI01000004_02137991_02139934.mRNA mRNA downstream 311935 2137366 ~ 2139934 (-) False CI01000004_02137991_02139934
CI01000004_02074726_02085013.mRNA mRNA downstream 366765 2074485 ~ 2085104 (-) True CI01000004_02074726_02085013
CI01000004_02066165_02067630.mRNA mRNA downstream 383971 2066165 ~ 2067898 (-) True CI01000004_02066165_02067630
CI01000004_02458156_02458869.mRNA mRNA upstream 5710 2457795 ~ 2458962 (-) True CI01000004_02458156_02458869
CI01000004_02571511_02598869.mRNA mRNA upstream 119226 2571311 ~ 2600082 (-) True CI01000004_02571511_02598869
CI01000004_02608555_02621378.mRNA mRNA upstream 156078 2608163 ~ 2621378 (-) True CI01000004_02608555_02621378
CI01000004_02638015_02638848.mRNA mRNA upstream 185749 2637834 ~ 2638945 (-) False CI01000004_02638015_02638848
CI01000004_02664483_02667653.mRNA mRNA upstream 212398 2664483 ~ 2667653 (-) True CI01000004_02664483_02667653
TU29027 other downstream 676928 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU30225 other upstream 822348 3274433 ~ 3275721 (-) True G26788
TU31341 other upstream 2726142 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 2727908 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 3168298 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU33056 other upstream 4082742 6534827 ~ 6545572 (-) True G29204

Expression Profile