RNA id: TCONS_00013119


Basic Information

Item Value
RNA id TCONS_00013119
length 816
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_006816
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 37075322 ~ 37127970 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggtgagagagagattgtgtgaGTCATCGCTGGGACGTGTGTCAGTGTTTTCTGAGAACGTGTGTGTGACGGCGGTGTGTTATGTTATGCAGGAGGTTCAGGATTGTTTAGAGGACTGGGCCGTCAGTCTCTCCGAGCTCAGCACCATGAAGACGGACCTGTCCCAGTACATCCTGACCGATGACGTCCTCCTTCTGCAGGAGCAAGTGGAGCATCTGCACTGCCAGTGGGAAGAGCTCTGCCTCAAAGTGTCTATGCGTAAGCAGGAGATTGCGGACCGACTGAATGCCTGGATCATTTTTAATGAGAAGAATCGGGAGCTGTGTGAATGGCTGACACAGATGGAAAACAAGGTGGCGCATAGTGCTGAGCTCAGCATCGAGGAGATGGTGGAGAAACTCAAGAAGGACTGCATGGAGGAGATCAATCTCTTCAGTGAGAATAAAACACATCTGAAACAGCTAGGAGAACAACTCATCACTGCTAGCAATAAGGCTAAAGAAACGGAAATCAATGACAAGATCAAGGACATCAATGACCGCTGGCAGCATCTGTTCGATCACATCGAGGCCAGGGTGAGGAAGCTGAAAGAGACTCTGGTGACCGTACAGCAGCTGGATAAAAACATGAGCAATCTCCGTACCTGGCTTTCCCGTGTCGAAAGTGAACTGGCCAAACCCGTCATCTACAGCATCTGCCACAACGAGGAGATCCAGCGCAAACTAGCAGAGCATCAGGACTTGCAGAGAGATATTGAACAGCACACAGAGGGTGTAGCGTCTGTTCTGACACTGTGTGACGTTTTGCTGCATGATGC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071218-5 Predicted to enable actin filament binding activity. Predicted to be located in membrane and nuclear envelope. Predicted to be integral component of membrane. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Is expressed in heart; neural keel; primary neuron hindbrain; primary neurons; and shield. Human ortholog(s) of this gene implicated in autosomal dominant Emery-Dreifuss muscular dystrophy 5. Orthologous to human SYNE2 (spectrin repeat containing nuclear envelope protein 2).

Ensembl:

ensembl_id ENSDART00000133242

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013498 lncRNA downstream 93803 37009812 ~ 37012236 (-) True XLOC_006815
TCONS_00013873 lncRNA downstream 108279 36995633 ~ 36997760 (-) True XLOC_006814
TCONS_00013101 lncRNA downstream 484114 36613162 ~ 36621925 (-) True XLOC_006805
TCONS_00013099 lncRNA downstream 493880 36587770 ~ 36612159 (-) True XLOC_006804
TCONS_00013096 lncRNA downstream 523758 36568947 ~ 36582281 (-) False XLOC_006803
TCONS_00013136 lncRNA upstream 405944 37528161 ~ 37535327 (-) False XLOC_006829
TCONS_00013135 lncRNA upstream 405944 37528161 ~ 37535424 (-) False XLOC_006829
TCONS_00013874 lncRNA upstream 405944 37528161 ~ 37535785 (-) True XLOC_006829
TCONS_00013142 lncRNA upstream 484840 37607057 ~ 37608372 (-) True XLOC_006832
TCONS_00013145 lncRNA upstream 487587 37609804 ~ 37613031 (-) False XLOC_006833
TCONS_00013117 mRNA downstream 2913 37093426 ~ 37103126 (-) False XLOC_006816
TCONS_00013116 mRNA downstream 3517 37090682 ~ 37102522 (-) False XLOC_006816
TCONS_00013113 mRNA downstream 194921 36868365 ~ 36911118 (-) True XLOC_006813
TCONS_00013111 mRNA downstream 243000 36846789 ~ 36863039 (-) False XLOC_006812
TCONS_00013112 mRNA downstream 243021 36846922 ~ 36863018 (-) True XLOC_006812
TCONS_00013120 mRNA upstream 49759 37171976 ~ 37180815 (-) True XLOC_006818
TCONS_00013122 mRNA upstream 64086 37186303 ~ 37189560 (-) True XLOC_006820
TCONS_00013123 mRNA upstream 77081 37199298 ~ 37200120 (-) True XLOC_006821
TCONS_00013124 mRNA upstream 86243 37208460 ~ 37210369 (-) True XLOC_006822
TCONS_00013125 mRNA upstream 104833 37227050 ~ 37229245 (-) True XLOC_006823
TCONS_00013107 other downstream 344723 36757555 ~ 36761316 (-) True XLOC_006809
TCONS_00013090 other downstream 570967 36530420 ~ 36535072 (-) False XLOC_006800
TCONS_00013082 other downstream 706664 36399260 ~ 36399375 (-) True XLOC_006797
TCONS_00013079 other downstream 714548 36321091 ~ 36391491 (-) False XLOC_006796
TCONS_00013121 other upstream 56385 37178602 ~ 37178716 (-) True XLOC_006819
TCONS_00013139 other upstream 472298 37594515 ~ 37600539 (-) False XLOC_006831
TCONS_00013140 other upstream 476494 37598711 ~ 37599245 (-) True XLOC_006831
TCONS_00013157 other upstream 528456 37650673 ~ 37656690 (-) False XLOC_006839
TCONS_00013167 other upstream 1730920 38853137 ~ 38853252 (-) True XLOC_006846

Expression Profile

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