Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU30008 |
| length | 1185 |
| lncRNA type | antisense_over |
| GC content | 0.44 |
| exon number | 2 |
| gene id | G26609 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 2670313 ~ 2671760 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU29948 | lncRNA | downstream | 30978 | 2624619 ~ 2629707 (-) | True | G26550 |
| TU29967 | lncRNA | downstream | 185150 | 2484232 ~ 2485163 (-) | True | G26568 |
| TU29935 | lncRNA | downstream | 213597 | 2456411 ~ 2456716 (-) | True | G26544 |
| TU29932 | lncRNA | downstream | 218228 | 2451869 ~ 2452085 (-) | True | G26541 |
| TU29929 | lncRNA | downstream | 224501 | 2445605 ~ 2445812 (-) | True | G26538 |
| TU30037 | lncRNA | upstream | 59163 | 2730923 ~ 2731238 (-) | True | G26635 |
| TU30038 | lncRNA | upstream | 63835 | 2735595 ~ 2735829 (-) | True | G26636 |
| TU30064 | lncRNA | upstream | 220068 | 2891828 ~ 2892300 (-) | True | G26656 |
| TU30069 | lncRNA | upstream | 234527 | 2906287 ~ 2908306 (-) | True | G26658 |
| TU30085 | lncRNA | upstream | 266244 | 2938004 ~ 2938481 (-) | True | G26673 |
| CI01000004_02664483_02667653.mRNA | mRNA | downstream | 2660 | 2664483 ~ 2667653 (-) | True | CI01000004_02664483_02667653 |
| CI01000004_02638015_02638848.mRNA | mRNA | downstream | 31368 | 2637834 ~ 2638945 (-) | False | CI01000004_02638015_02638848 |
| CI01000004_02608555_02621378.mRNA | mRNA | downstream | 48935 | 2608163 ~ 2621378 (-) | True | CI01000004_02608555_02621378 |
| CI01000004_02571511_02598869.mRNA | mRNA | downstream | 70231 | 2571311 ~ 2600082 (-) | True | CI01000004_02571511_02598869 |
| CI01000004_02458156_02458869.mRNA | mRNA | downstream | 211351 | 2457795 ~ 2458962 (-) | True | CI01000004_02458156_02458869 |
| CI01000004_02777722_02810321.mRNA | mRNA | upstream | 105962 | 2777722 ~ 2810321 (-) | True | CI01000004_02777722_02810321 |
| CI01000004_02812936_02825192.mRNA | mRNA | upstream | 141093 | 2812853 ~ 2825192 (-) | True | CI01000004_02812936_02825192 |
| CI01000004_02834634_02863535.mRNA | mRNA | upstream | 160984 | 2832744 ~ 2863598 (-) | True | CI01000004_02834634_02863535 |
| CI01000004_02953160_02955378.mRNA | mRNA | upstream | 281386 | 2953146 ~ 2955490 (-) | True | CI01000004_02953160_02955378 |
| CI01000004_03070803_03073454.mRNA | mRNA | upstream | 398856 | 3070616 ~ 3073481 (-) | True | CI01000004_03070803_03073454 |
| TU29027 | other | downstream | 895372 | 1773040 ~ 1774941 (-) | True | CI01000004_01773383_01774888 |
| TU30225 | other | upstream | 602673 | 3274433 ~ 3275721 (-) | True | G26788 |
| TU31341 | other | upstream | 2506467 | 5178227 ~ 5203724 (-) | False | G27746 |
| TU31343 | other | upstream | 2508233 | 5179993 ~ 5195103 (-) | True | G27746 |
| TU31692 | other | upstream | 2948623 | 5620383 ~ 5627514 (-) | True | CI01000004_05617072_05627369 |
| TU33056 | other | upstream | 3863067 | 6534827 ~ 6545572 (-) | True | G29204 |
