RNA id: TCONS_00013499


Basic Information

Item Value
RNA id TCONS_00013499
length 209
lncRNA type intronic
GC content 0.25
exon number 2
gene id XLOC_006817
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 37110212 ~ 37110536 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGCATCATACTagtgTTGGGCTGTTtataaaaatgtagttaaatgGTAGTTAAATGGTAGTgctatttaaataagtagttagtTAAGTGGGTagtctgtatttaatttaaatttatgaatGCAACCAGATTGTCTCTACATATTATTTGTGTCAAATTTTAATtggtcattttaaatgattaaaactcattaataagttatatattt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013498 lncRNA downstream 97976 37009812 ~ 37012236 (-) True XLOC_006815
TCONS_00013873 lncRNA downstream 112452 36995633 ~ 36997760 (-) True XLOC_006814
TCONS_00013101 lncRNA downstream 488287 36613162 ~ 36621925 (-) True XLOC_006805
TCONS_00013099 lncRNA downstream 498053 36587770 ~ 36612159 (-) True XLOC_006804
TCONS_00013096 lncRNA downstream 527931 36568947 ~ 36582281 (-) False XLOC_006803
TCONS_00013136 lncRNA upstream 417625 37528161 ~ 37535327 (-) False XLOC_006829
TCONS_00013135 lncRNA upstream 417625 37528161 ~ 37535424 (-) False XLOC_006829
TCONS_00013874 lncRNA upstream 417625 37528161 ~ 37535785 (-) True XLOC_006829
TCONS_00013142 lncRNA upstream 496521 37607057 ~ 37608372 (-) True XLOC_006832
TCONS_00013145 lncRNA upstream 499268 37609804 ~ 37613031 (-) False XLOC_006833
TCONS_00013118 mRNA downstream 225 37105818 ~ 37109987 (-) False XLOC_006816
TCONS_00013115 mRNA downstream 1902 37077982 ~ 37108310 (-) False XLOC_006816
TCONS_00013117 mRNA downstream 7086 37093426 ~ 37103126 (-) False XLOC_006816
TCONS_00013116 mRNA downstream 7690 37090682 ~ 37102522 (-) False XLOC_006816
TCONS_00013113 mRNA downstream 199094 36868365 ~ 36911118 (-) True XLOC_006813
TCONS_00013120 mRNA upstream 61440 37171976 ~ 37180815 (-) True XLOC_006818
TCONS_00013122 mRNA upstream 75767 37186303 ~ 37189560 (-) True XLOC_006820
TCONS_00013123 mRNA upstream 88762 37199298 ~ 37200120 (-) True XLOC_006821
TCONS_00013124 mRNA upstream 97924 37208460 ~ 37210369 (-) True XLOC_006822
TCONS_00013125 mRNA upstream 116514 37227050 ~ 37229245 (-) True XLOC_006823
TCONS_00013107 other downstream 348896 36757555 ~ 36761316 (-) True XLOC_006809
TCONS_00013090 other downstream 575140 36530420 ~ 36535072 (-) False XLOC_006800
TCONS_00013082 other downstream 710837 36399260 ~ 36399375 (-) True XLOC_006797
TCONS_00013079 other downstream 718721 36321091 ~ 36391491 (-) False XLOC_006796
TCONS_00013121 other upstream 68066 37178602 ~ 37178716 (-) True XLOC_006819
TCONS_00013139 other upstream 483979 37594515 ~ 37600539 (-) False XLOC_006831
TCONS_00013140 other upstream 488175 37598711 ~ 37599245 (-) True XLOC_006831
TCONS_00013157 other upstream 540137 37650673 ~ 37656690 (-) False XLOC_006839
TCONS_00013167 other upstream 1742601 38853137 ~ 38853252 (-) True XLOC_006846

Expression Profile

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