RNA id: TU30038


Basic Information

Item Value
RNA id TU30038
length 235
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G26636
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2735595 ~ 2735829 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAATGTATCTAATATGATAAACAGAGCTGCGTTACCTCATACTCATGACCGGAAAAGCGGAAGCAGCGCCGGCGACTGTGGCATAATAAAAGTTCCGCTGCTCGTGAGGCATGTGTTGCGCAATCGCTCCAGCAGCCTCGTTCAGCTCCCACAACACTCTGTCCCGCTCTGCTTCATACTGCAATAACGTTAATAATCGCATCCATGAGCATGATTTCTTCCCGAGTCCTATCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30037 lncRNA downstream 4357 2730923 ~ 2731238 (-) True G26635
TU30008 lncRNA downstream 63835 2670313 ~ 2671760 (-) True G26609
TU29948 lncRNA downstream 96260 2624619 ~ 2629707 (-) True G26550
TU29967 lncRNA downstream 250432 2484232 ~ 2485163 (-) True G26568
TU29935 lncRNA downstream 278879 2456411 ~ 2456716 (-) True G26544
TU30064 lncRNA upstream 155999 2891828 ~ 2892300 (-) True G26656
TU30069 lncRNA upstream 170458 2906287 ~ 2908306 (-) True G26658
TU30085 lncRNA upstream 202175 2938004 ~ 2938481 (-) True G26673
TU30102 lncRNA upstream 229068 2964897 ~ 2965179 (-) True G26689
TU30103 lncRNA upstream 229422 2965251 ~ 2965590 (-) True G26690
CI01000004_02664483_02667653.mRNA mRNA downstream 67942 2664483 ~ 2667653 (-) True CI01000004_02664483_02667653
CI01000004_02638015_02638848.mRNA mRNA downstream 96650 2637834 ~ 2638945 (-) False CI01000004_02638015_02638848
CI01000004_02608555_02621378.mRNA mRNA downstream 114217 2608163 ~ 2621378 (-) True CI01000004_02608555_02621378
CI01000004_02571511_02598869.mRNA mRNA downstream 135513 2571311 ~ 2600082 (-) True CI01000004_02571511_02598869
CI01000004_02458156_02458869.mRNA mRNA downstream 276633 2457795 ~ 2458962 (-) True CI01000004_02458156_02458869
CI01000004_02777722_02810321.mRNA mRNA upstream 41893 2777722 ~ 2810321 (-) True CI01000004_02777722_02810321
CI01000004_02812936_02825192.mRNA mRNA upstream 77024 2812853 ~ 2825192 (-) True CI01000004_02812936_02825192
CI01000004_02834634_02863535.mRNA mRNA upstream 96915 2832744 ~ 2863598 (-) True CI01000004_02834634_02863535
CI01000004_02953160_02955378.mRNA mRNA upstream 217317 2953146 ~ 2955490 (-) True CI01000004_02953160_02955378
CI01000004_03070803_03073454.mRNA mRNA upstream 334787 3070616 ~ 3073481 (-) True CI01000004_03070803_03073454
TU29027 other downstream 960654 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU30225 other upstream 538604 3274433 ~ 3275721 (-) True G26788
TU31341 other upstream 2442398 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 2444164 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 2884554 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU33056 other upstream 3798998 6534827 ~ 6545572 (-) True G29204

Expression Profile