RNA id: TU30227


Basic Information

Item Value
RNA id TU30227
length 460
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G26788
representative False

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3267683 ~ 3275721 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAATTCAAATCCAAAAGCAAACAAGTTAGCAGTAAAGTGATCCAGCAAAGTGCTTTCTTACAGAGTCAGGTGTGACGCCATTCTTAATGAAGCGGGAGAACTGCTTCTTGTACAGGTCCTCATCCTCCTCCATAAGATAGCTCATGTACTCCGAGACGTTCTGCCCCATGATGTGCTTCCTGTGAACCTCCGCATTAAACTCCTTACTTTCAGTGTCGTAGCCTGGGAACCGTTTAGTGCTGAGGGATGGACAGTCCTCCATCCACTGCTCCTTTGAGAGCTCCAAACACCTTATTCCCCGTGCTGGTTCTGGCGAGACCAGCGTCCAGGTAGCATGTAAATGCCCCTGGCTGGCCATCAATGCTTTCCACATTAAATTCGTCACCAGTTACCTCAACCTGGCCTTCGTAGACCTTATCCAGACCAAACTTATTCAGCAGCTATAAGCAGAAAACAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30272 lncRNA downstream 55898 3214890 ~ 3215202 (-) True G26820
TU30183 lncRNA downstream 91742 3172410 ~ 3179358 (-) False G26754
TU30185 lncRNA downstream 91742 3174448 ~ 3179358 (-) True G26754
TU30165 lncRNA downstream 138335 3132556 ~ 3132765 (-) True G26744
TU30175 lncRNA downstream 148840 3121872 ~ 3122260 (-) True G26752
TU30262 lncRNA upstream 26062 3300799 ~ 3306425 (-) True G26810
TU30264 lncRNA upstream 56008 3330745 ~ 3332243 (-) True G26812
TU30263 lncRNA upstream 68077 3342814 ~ 3355165 (-) True G26811
TU30255 lncRNA upstream 71263 3346000 ~ 3351924 (-) True G26803
TU30289 lncRNA upstream 80478 3355215 ~ 3355472 (-) True G26837
CI01000004_03244252_03265862.mRNA mRNA downstream 5053 3243903 ~ 3266047 (-) True CI01000004_03244252_03265862
CI01000004_03238528_03240932.mRNA mRNA downstream 29609 3238358 ~ 3241491 (-) True CI01000004_03238528_03240932
CI01000004_03214098_03222707.mRNA mRNA downstream 48393 3214098 ~ 3222707 (-) True CI01000004_03214098_03222707
CI01000004_03204599_03205569.mRNA mRNA downstream 65032 3204572 ~ 3206068 (-) True CI01000004_03204599_03205569
CI01000004_03187077_03196194.mRNA mRNA downstream 74902 3187077 ~ 3196198 (-) True CI01000004_03187077_03196194
CI01000004_03277921_03285364.mRNA mRNA upstream 3004 3277741 ~ 3285364 (-) True CI01000004_03277921_03285364
CI01000004_03433963_03436906.mRNA mRNA upstream 159095 3433832 ~ 3436906 (-) True CI01000004_03433963_03436906
CI01000004_03475454_03478135.mRNA mRNA upstream 200157 3474894 ~ 3479485 (-) True CI01000004_03475454_03478135
CI01000004_03505898_03508656.mRNA mRNA upstream 231061 3505798 ~ 3508770 (-) True CI01000004_03505898_03508656
CI01000004_03514180_03525227.mRNA mRNA upstream 238936 3513673 ~ 3525582 (-) True CI01000004_03514180_03525227
TU29027 other downstream 1496159 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU31341 other upstream 1903490 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 1905256 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 2345646 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU33056 other upstream 3260090 6534827 ~ 6545572 (-) True G29204
TU33263 other upstream 3356556 6631293 ~ 6631907 (-) True G29388

Expression Profile