RNA id: TU30225


Basic Information

Item Value
RNA id TU30225
length 504
RNA type TUCP
GC content 0.48
exon number 3
gene id G26788
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3267683 ~ 3275721 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTTTCCAAATGATTTATTTGGAAAAGGTGCACACTTTCTTTGGAGCTGTTGACAGTTCGTCTCTTCATTCGTCTTCAGCAGCCTCCTGAGCCCGGAGGAAGCTGGCCTTTTTCTGGGCCACGCGGTCCTTCCTCTGGGCCAGAGTGAGCTTGGCGCGATTCCACCTCTTCTTGACCTCTTTCTTGGGCTTCTTCTCATGTACCGGGTTCTCACGAATGGAAGCATGAGCCTTTTTGTACATCTCTTCAACCTGCAGGAAAGAGTCAGGTGTGACGCCATTCTTAATGAAGCGGGAGAACTGCTTCTTGTACAGGTCCTCATCCTCCTCCATAAGATAGCTCATGTACTCCGAGACGTTCTGCCCCATGATGTGCTTCCTGTGAACCTCCGCATTAAACTCCTTACTTTCAGTGTCGTAGCCTGGGAACCGTTTAGTGCTGAGAAAGAAAATTATATTGTCAATATTCCCATCAATAAAGATGGGACATACAACTTCACAGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30272 lncRNA downstream 59231 3214890 ~ 3215202 (-) True G26820
TU30183 lncRNA downstream 95075 3172410 ~ 3179358 (-) False G26754
TU30185 lncRNA downstream 95075 3174448 ~ 3179358 (-) True G26754
TU30165 lncRNA downstream 141668 3132556 ~ 3132765 (-) True G26744
TU30173 lncRNA downstream 152173 3119950 ~ 3122260 (-) False G26752
TU30262 lncRNA upstream 25078 3300799 ~ 3306425 (-) True G26810
TU30264 lncRNA upstream 55024 3330745 ~ 3332243 (-) True G26812
TU30263 lncRNA upstream 67093 3342814 ~ 3355165 (-) True G26811
TU30255 lncRNA upstream 70279 3346000 ~ 3351924 (-) True G26803
TU30289 lncRNA upstream 79494 3355215 ~ 3355472 (-) True G26837
CI01000004_03244252_03265862.mRNA mRNA downstream 8386 3243903 ~ 3266047 (-) True CI01000004_03244252_03265862
CI01000004_03238528_03240932.mRNA mRNA downstream 32942 3238358 ~ 3241491 (-) True CI01000004_03238528_03240932
CI01000004_03214098_03222707.mRNA mRNA downstream 51726 3214098 ~ 3222707 (-) True CI01000004_03214098_03222707
CI01000004_03204599_03205569.mRNA mRNA downstream 68365 3204572 ~ 3206068 (-) True CI01000004_03204599_03205569
CI01000004_03187077_03196194.mRNA mRNA downstream 78235 3187077 ~ 3196198 (-) True CI01000004_03187077_03196194
CI01000004_03277921_03285364.mRNA mRNA upstream 2020 3277741 ~ 3285364 (-) True CI01000004_03277921_03285364
CI01000004_03433963_03436906.mRNA mRNA upstream 158111 3433832 ~ 3436906 (-) True CI01000004_03433963_03436906
CI01000004_03475454_03478135.mRNA mRNA upstream 199173 3474894 ~ 3479485 (-) True CI01000004_03475454_03478135
CI01000004_03505898_03508656.mRNA mRNA upstream 230077 3505798 ~ 3508770 (-) True CI01000004_03505898_03508656
CI01000004_03514180_03525227.mRNA mRNA upstream 237952 3513673 ~ 3525582 (-) True CI01000004_03514180_03525227
TU29027 other downstream 1499492 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU31341 other upstream 1902506 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 1904272 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 2344662 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU33056 other upstream 3259106 6534827 ~ 6545572 (-) True G29204
TU33263 other upstream 3355572 6631293 ~ 6631907 (-) True G29388

Expression Profile