Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU30262 |
| length | 1286 |
| lncRNA type | inter_gene |
| GC content | 0.39 |
| exon number | 2 |
| gene id | G26810 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 3300799 ~ 3306425 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU30231 | lncRNA | downstream | 25078 | 3267683 ~ 3275721 (-) | False | G26788 |
| TU30224 | lncRNA | downstream | 25078 | 3271100 ~ 3275721 (-) | False | G26788 |
| TU30227 | lncRNA | downstream | 26062 | 3271100 ~ 3274737 (-) | False | G26788 |
| TU30272 | lncRNA | downstream | 85597 | 3214890 ~ 3215202 (-) | True | G26820 |
| TU30183 | lncRNA | downstream | 121441 | 3172410 ~ 3179358 (-) | False | G26754 |
| TU30264 | lncRNA | upstream | 24320 | 3330745 ~ 3332243 (-) | True | G26812 |
| TU30263 | lncRNA | upstream | 36389 | 3342814 ~ 3355165 (-) | True | G26811 |
| TU30255 | lncRNA | upstream | 39575 | 3346000 ~ 3351924 (-) | True | G26803 |
| TU30289 | lncRNA | upstream | 48790 | 3355215 ~ 3355472 (-) | True | G26837 |
| TU30307 | lncRNA | upstream | 99978 | 3406403 ~ 3406827 (-) | True | G26854 |
| CI01000004_03277921_03285364.mRNA | mRNA | downstream | 15435 | 3277741 ~ 3285364 (-) | True | CI01000004_03277921_03285364 |
| CI01000004_03244252_03265862.mRNA | mRNA | downstream | 34752 | 3243903 ~ 3266047 (-) | True | CI01000004_03244252_03265862 |
| CI01000004_03238528_03240932.mRNA | mRNA | downstream | 59308 | 3238358 ~ 3241491 (-) | True | CI01000004_03238528_03240932 |
| CI01000004_03214098_03222707.mRNA | mRNA | downstream | 78092 | 3214098 ~ 3222707 (-) | True | CI01000004_03214098_03222707 |
| CI01000004_03204599_03205569.mRNA | mRNA | downstream | 94731 | 3204572 ~ 3206068 (-) | True | CI01000004_03204599_03205569 |
| CI01000004_03433963_03436906.mRNA | mRNA | upstream | 127407 | 3433832 ~ 3436906 (-) | True | CI01000004_03433963_03436906 |
| CI01000004_03475454_03478135.mRNA | mRNA | upstream | 168469 | 3474894 ~ 3479485 (-) | True | CI01000004_03475454_03478135 |
| CI01000004_03505898_03508656.mRNA | mRNA | upstream | 199373 | 3505798 ~ 3508770 (-) | True | CI01000004_03505898_03508656 |
| CI01000004_03514180_03525227.mRNA | mRNA | upstream | 207248 | 3513673 ~ 3525582 (-) | True | CI01000004_03514180_03525227 |
| CI01000004_03556991_03559357.mRNA | mRNA | upstream | 250057 | 3556482 ~ 3559357 (-) | True | CI01000004_03556991_03559357 |
| TU30225 | other | downstream | 25078 | 3274433 ~ 3275721 (-) | True | G26788 |
| TU29027 | other | downstream | 1525858 | 1773040 ~ 1774941 (-) | True | CI01000004_01773383_01774888 |
| TU31341 | other | upstream | 1871802 | 5178227 ~ 5203724 (-) | False | G27746 |
| TU31343 | other | upstream | 1873568 | 5179993 ~ 5195103 (-) | True | G27746 |
| TU31692 | other | upstream | 2313958 | 5620383 ~ 5627514 (-) | True | CI01000004_05617072_05627369 |
| TU33056 | other | upstream | 3228402 | 6534827 ~ 6545572 (-) | True | G29204 |
| TU33263 | other | upstream | 3324868 | 6631293 ~ 6631907 (-) | True | G29388 |
