RNA id: TU30307


Basic Information

Item Value
RNA id TU30307
length 425
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G26854
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3406403 ~ 3406827 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGGCCAGATCTGTGCCTTGCCACAATTCTGTCTCTGAGCTCTTCAGGCAGTTCCTTTGACCTCATGATTCTCATTTGCTCTGACATGCACTGTGAGCTGTAAGGTTTTATATAGACAGGTGTGTGGCTTTCCTAATCCAGTCCAATCAGTATAATCAAACAAAGCTAGACTCAAATGAAGGTGTAGAACCATCTCAAGGATGATCAGAAGAAACGGACAGCACCTGAGTTAAATATATGAGTGTCACAGCAAAGGGTCTGAATACTTTGGACCATGTGATATTTCAGTTTTTCTTTTTTAATAAATCTGCAAAAATGTCAACAATTCTGTGTTTTTCTGTCAATTTGGGGTGCTGTGTGTACATTAATGAGGAAAAAAAAATTAACTTAAATGATTTTAGCAAATGGCTGCAATATAACAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30289 lncRNA downstream 50931 3355215 ~ 3355472 (-) True G26837
TU30263 lncRNA downstream 51238 3342814 ~ 3355165 (-) True G26811
TU30255 lncRNA downstream 54479 3346000 ~ 3351924 (-) True G26803
TU30264 lncRNA downstream 74160 3330745 ~ 3332243 (-) True G26812
TU30262 lncRNA downstream 99978 3300799 ~ 3306425 (-) True G26810
TU30394 lncRNA upstream 141647 3548474 ~ 3548695 (-) True G26924
TU30421 lncRNA upstream 250727 3657554 ~ 3657869 (-) True G26948
TU30428 lncRNA upstream 266112 3672939 ~ 3673155 (-) True G26955
TU30372 lncRNA upstream 412356 3819183 ~ 3929949 (-) True G26902
TU30359 lncRNA upstream 477538 3884365 ~ 3907456 (-) True G26889
CI01000004_03277921_03285364.mRNA mRNA downstream 121039 3277741 ~ 3285364 (-) True CI01000004_03277921_03285364
CI01000004_03244252_03265862.mRNA mRNA downstream 140356 3243903 ~ 3266047 (-) True CI01000004_03244252_03265862
CI01000004_03238528_03240932.mRNA mRNA downstream 164912 3238358 ~ 3241491 (-) True CI01000004_03238528_03240932
CI01000004_03214098_03222707.mRNA mRNA downstream 183696 3214098 ~ 3222707 (-) True CI01000004_03214098_03222707
CI01000004_03204599_03205569.mRNA mRNA downstream 200335 3204572 ~ 3206068 (-) True CI01000004_03204599_03205569
CI01000004_03433963_03436906.mRNA mRNA upstream 27005 3433832 ~ 3436906 (-) True CI01000004_03433963_03436906
CI01000004_03475454_03478135.mRNA mRNA upstream 68067 3474894 ~ 3479485 (-) True CI01000004_03475454_03478135
CI01000004_03505898_03508656.mRNA mRNA upstream 98971 3505798 ~ 3508770 (-) True CI01000004_03505898_03508656
CI01000004_03514180_03525227.mRNA mRNA upstream 106846 3513673 ~ 3525582 (-) True CI01000004_03514180_03525227
CI01000004_03556991_03559357.mRNA mRNA upstream 149655 3556482 ~ 3559357 (-) True CI01000004_03556991_03559357
TU30225 other downstream 130682 3274433 ~ 3275721 (-) True G26788
TU29027 other downstream 1631462 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU31341 other upstream 1771400 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 1773166 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 2213556 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU33056 other upstream 3128000 6534827 ~ 6545572 (-) True G29204
TU33263 other upstream 3224466 6631293 ~ 6631907 (-) True G29388

Expression Profile