RNA id: TU30394



Basic Information


Item Value
RNA id TU30394
length 222
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G26924
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3548474 ~ 3548695 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATCACAATTTGGCTGTTTTCAAACTCGCTCAAATCCTTGCGCTTGCCCATTTTTCCTGCTTCTAACACATCAACTTTGAGGACAAAATGTTCACTTGCTGCCTAATATATCCCACCCACTAACAGGTGCCGTGATGAAAAGATAATCAGTGTTATTCACTTCACCTGTCAGTGGTCATAATGTTATGCTTGATTGGTGTATATATACTGTATATGAGAAGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU30307 lncRNA downstream 141647 3406403 ~ 3406827 (-) True G26854
TU30289 lncRNA downstream 193002 3355215 ~ 3355472 (-) True G26837
TU30263 lncRNA downstream 193309 3342814 ~ 3355165 (-) True G26811
TU30255 lncRNA downstream 196550 3346000 ~ 3351924 (-) True G26803
TU30264 lncRNA downstream 216231 3330745 ~ 3332243 (-) True G26812
TU30421 lncRNA upstream 108859 3657554 ~ 3657869 (-) True G26948
TU30428 lncRNA upstream 124244 3672939 ~ 3673155 (-) True G26955
TU30372 lncRNA upstream 270488 3819183 ~ 3929949 (-) True G26902
TU30359 lncRNA upstream 335670 3884365 ~ 3907456 (-) True G26889
TU30456 lncRNA upstream 408049 3956744 ~ 3956954 (-) True G26983
CI01000004_03514180_03525227.mRNA mRNA downstream 22892 3513673 ~ 3525582 (-) True CI01000004_03514180_03525227
CI01000004_03505898_03508656.mRNA mRNA downstream 39704 3505798 ~ 3508770 (-) True CI01000004_03505898_03508656
CI01000004_03475454_03478135.mRNA mRNA downstream 68989 3474894 ~ 3479485 (-) True CI01000004_03475454_03478135
CI01000004_03433963_03436906.mRNA mRNA downstream 111568 3433832 ~ 3436906 (-) True CI01000004_03433963_03436906
CI01000004_03277921_03285364.mRNA mRNA downstream 263110 3277741 ~ 3285364 (-) True CI01000004_03277921_03285364
CI01000004_03556991_03559357.mRNA mRNA upstream 7787 3556482 ~ 3559357 (-) True CI01000004_03556991_03559357
CI01000004_03559459_03560064.mRNA mRNA upstream 10764 3559459 ~ 3560064 (-) True CI01000004_03559459_03560064
CI01000004_03588875_03589130.mRNA mRNA upstream 39281 3587976 ~ 3589253 (-) True CI01000004_03588875_03589130
CI01000004_03594612_03595116.mRNA mRNA upstream 45438 3594133 ~ 3595141 (-) True CI01000004_03594612_03595116
CI01000004_03612407_03645686.mRNA mRNA upstream 63283 3611978 ~ 3647464 (-) True CI01000004_03612407_03645686
TU30225 other downstream 272753 3274433 ~ 3275721 (-) True G26788
TU29027 other downstream 1773533 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU31341 other upstream 1629532 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 1631298 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 2071688 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU33056 other upstream 2986132 6534827 ~ 6545572 (-) True G29204
TU33263 other upstream 3082598 6631293 ~ 6631907 (-) True G29388

Expression Profile