RNA id: TU31341



Basic Information


Item Value
RNA id TU31341
length 2118
RNA type TUCP
GC content 0.48
exon number 28
gene id G27746
representative False

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5178227 ~ 5203724 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTATATTATTATTTTTATTGTATTGTATTATATATTAACAACATTGTATACAGCGACAGGTCTACATTAGGCTTAGGCTTCATTTACATTGCAAGGCCTAATACATAGGTCCAATATTCTGACACGAAACATATAAGTGTTTCATCAATATCCTGCAAGGTGGCCATTTTGACCAAAGTGCATTTGATTGCTTTCACGCATTAATATGGGTGCACTTCACAGAGAGCACATGCACATACTGTATCGGCGGTAATGACAACAGGTCTGAATCTCTGATCATATTTCATGTATGATTCAAATGCAATTACTGACAAAGTGACGGACTTACTGATTAGGCCTGACTCATTCAGTGTGATCAGACTGCGTGGGATCAGATCACACACCAAACTGGGCTCTCAGTGACAACATTACTGGTCATTAAATTCACCACCTGCTGACTGTGCCTGGTCCAGAATTTGCCTGATGTCACTTCACTAATAGAGGCAAAGCTTGCAGATTGATCGTTTGCAGTGACAGAGTTTCCATGGTAACACAGGTACTTACAATGGGGCCAGGTGGGCCCTGTGGACCCTCGCCTCCCTTCAGACCAGATGGACCCGCTGCGCCAGGAAGCCCCCTTTGTCCTGGGAACCCTTTCAATCCGGCAGGGCCAGGTTTCCCAGAAATCCCCTGAGGACCTGGATCACCCTTTCCACCTTCTTTGCCAGCAGCTCCGGGAAGACCTTGCTCTCCAGGGGGCCCTGGAGATCCAGGATGTCCTCTCTCTCCAACAGGACCAGTTTCTCCAGTAGAGCCCTGTGGGCCAACAACACCTCCAGGTCCTGGAGGTCCAGTCTTTCCTTGAAAACCAGTCTCTCCTCGCTGTCCAGGGTGACCAGGCAATCCGTCCTTTCCAGCAGGCCCAGGTGGGCCTTTAGGGCCTGGTAATCCAACAGGGCCCTGAGGTCCTTGGGGTCCTCTCTCTCCTGGGCCACCAGATGGTCCATCATTTCCTGATGTTCCCTTTGGTCCAGGTTTTCCTGTTGGACCTCTGGCACCTCTTCCACCACGGGGTCCCGTTGGACCTCTTTGTCCTCTTGGACCCGCTTTACCAGCGATACCCCTTCCTCCCTTCTCACCATTGGATCCAGGGAAGCCAGGGAAACCAGTAGAGCCCTTAGGACCTTGTCTTCCCGGGTATCCAGGCAAACCTGGAACACCAAGTTTTCCCTTCTCTCCTGCCGTGCCCATAGGACCAGCCTCTCCGGTGGGACCTGATTTACCTTTGGGCCCCTCTGGTCCGTCTTCTCCTCTGGGGCCCAAAACACCACCCTCTCCCTTGTCACCCTTGAGGCCCATGTCGCCCTTGAACCCAGGAAAACCATCTTCTCCCTTCTCGCCTTTGCCGCCCTTCAAGCCACGAACACCCTCGGCACCCTTCACACCTCGGGGGCCGGGATAACCAATGGAACCCTGGGGACCTGGGTGGCCAGCTGCTCCTTTCTCCCCGGGAGGACCCTCTTTCCCAGGATGACCAGGAGGCCCATCAGCCCCAGCCAGCCCATGGAGCCCCTGTTTTCCACCAGGACCTTTCTCTCCAGGTGGACCAATCGGGCCTTGAGGACCAGGCAGACCATGTGGACCAGTGTTACCCTGTTGCCCAGGGGGTCCAGGCTCTCCTTGAGGACCCATATTTCCTTTAGGGCCAGGTGGTCCATCCAATCCAGGAAGACCACGCTGTCCAGCGGTACCAGGAGATCCTCTGGGGCCCAGCAGTCCTCTTGGACCACTTTCTCCTGGCATTCCCCTCTGTCCGATCTCACCATCCTCACCCCTTGGTCCATCCTCTCCTGGAGGGCCTGGTAGGCCGATGGGACCTGTCTCACCTCTGTGTCCCTTCTCACCAGGTAAGCCAGGAAGCCCATCAAATCCTCGGTCCCCCTTGGCTCCTGATTCTCCAGGAATTCCTCTGGCTCCGTCGGCTCCATTTCGGCCCCTCTTGCCTGGTTTTCCAGGTGATCCAGTAGGGCCTTGAAGTCCTCTTGGTCCCTGTGGGCCAGAATCTCCACTTTCCCCTTTAGCACCAGGTGCACCAGGACCACCCACAGGGCCGGAGCGTCCTGTCAATCCCATTGGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU31335 lncRNA downstream 24909 5144569 ~ 5153318 (-) True G27740
TU31270 lncRNA downstream 213999 4961931 ~ 4964228 (-) True G27685
TU31253 lncRNA downstream 286002 4891700 ~ 4892225 (-) True G27672
TU31222 lncRNA downstream 370686 4805698 ~ 4807541 (-) True G27642
TU31188 lncRNA downstream 402633 4773738 ~ 4775594 (-) True G27615
TU31355 lncRNA upstream 3032 5206756 ~ 5208585 (-) True G27755
TU31482 lncRNA upstream 36622 5240346 ~ 5245574 (-) True G27859
TU31505 lncRNA upstream 49950 5253674 ~ 5253923 (-) True G27873
TU31523 lncRNA upstream 93787 5297511 ~ 5297995 (-) True G27890
TU31680 lncRNA upstream 240299 5444023 ~ 5444465 (-) True G28026
CI01000004_05113181_05116553.mRNA mRNA downstream 61649 5113162 ~ 5116578 (-) True CI01000004_05113181_05116553
CI01000004_05073667_05096493.mRNA mRNA downstream 80943 5072918 ~ 5097284 (-) True CI01000004_05073667_05096493
CI01000004_05001695_05020719.mRNA mRNA downstream 157420 5001617 ~ 5020807 (-) True CI01000004_05001695_05020719
CI01000004_04980768_04988531.mRNA mRNA downstream 188689 4980552 ~ 4989538 (-) True CI01000004_04980768_04988531
CI01000004_04909539_04912655.mRNA mRNA downstream 265514 4909539 ~ 4912713 (-) True CI01000004_04909539_04912655
CI01000004_05232776_05234535.mRNA mRNA upstream 28705 5232429 ~ 5235527 (-) True CI01000004_05232776_05234535
CI01000004_05248429_05300603.mRNA mRNA upstream 44705 5248429 ~ 5300603 (-) True CI01000004_05248429_05300603
CI01000004_05318592_05325105.mRNA mRNA upstream 114868 5318592 ~ 5325105 (-) True CI01000004_05318592_05325105
CI01000004_05337445_05339997.mRNA mRNA upstream 133189 5336913 ~ 5340567 (-) True CI01000004_05337445_05339997
CI01000004_05355484_05357726.mRNA mRNA upstream 151542 5355266 ~ 5357799 (-) True CI01000004_05355484_05357726
TU30225 other downstream 1902506 3274433 ~ 3275721 (-) True G26788
TU29027 other downstream 3403286 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU31692 other upstream 416659 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU33056 other upstream 1331103 6534827 ~ 6545572 (-) True G29204
TU33263 other upstream 1427569 6631293 ~ 6631907 (-) True G29388
TU33567 other upstream 2760640 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 3150774 8354498 ~ 8358127 (-) False G29746

Expression Profile