RNA id: TCONS_00013874


Basic Information

Item Value
RNA id TCONS_00013874
length 7625
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id XLOC_006829
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 37528161 ~ 37535785 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tacagtgcataaatgAGTGTAAGAATTTCTTGAAGAGATCATTTAACCGTTTAAAAGGCTTTAATTTCTGTTCATAGTACATAATAATCACTATTGTACGCCCGAGAGAAAGCTTGAAGGAGTTTATGAGCCATAAAAGCGTTCAAAAGTCGAGTTGATTATAATCAGATAAGCCGTATGTCAAGAAACAGGCAACAAGAGAGAGGAGGAAACGCAACAGCAGAGGATGCGAGAAGAATGGAGTTAGATGCTGGAGCGTCATCATTGCCTAGTGACTCTCCTAGCAACAGGAAACATCTGTTTCAGCGTCGACCAATCAGAAGCCGGCGCAGTGTGTTATTGCTCTCTGCACAGAAAGAGGATATTTTAAGAGCCGAGAGTGAGCCGAATACTACAGGGATTATATCAAAAGCAAGACTTCGACATCTGGGGGCGACGCGTCAAACTCACGCGGTGCTGAAAGCGGCGGCGTTCGCTACAATATGAGCTGTTTTGAGCCTCTGATCTGATGAACGTGCGTGAGGGGACTGTTAATGTGCCTTTAAAAATACGGTAGGATCCTTTTTACTCTTGTTTATGGTGAGTGTTGAGTAAGAAAACATGGAAGTCTATTTTTAGTGCATGTATTTGTCTGGTGTGGAGCAGTTATAGTACATGCAGGTGTTTAATAGCAGTACACGTCCTAGTTTGGAGCTGTTTTGATTTTTGGAAAATGCGCGTTCTGTGATTCATTCATTAGCGCGTGACAGTTGAGGGGCTGATGACTATACTGCATTATACAAGATAACGCACACGTTACGACTTGTTTTTATTTGATACCctctaaaacaacaaaaatacaattttatacatatataaaaaatattgtatcAAGAAGAAATTAGCTTCCTATAcggatttaaaatgtatattttttaacataaaacGTGTCTACATTTCAGTTAGACGaaataaaattattctaaaatgtaaaaaaaaaaaataaagatttgtgctaattatatattaatatgcatgctataTTTATAGATGTACAGGCTTAGCATattaagtacacccctcacaaatctatcttttaaattcatattttaataggaagctttacaatatgtttgtgcatattaattagattaatcactactgaagccaaatctggagctattctaaaaaaataacttacaataacagtccaaaacCTAGTACATGCAAATTTCTGTTatagaataatattaaatacaacttaaaaaaagagggaaaatgaagagaagcaaaacaattgaCAGCtttgtcaatttgtttgtttttttttttttgttttttttttgcaatgttttggtTGAGTTTAACgttaattatgttatattaagtCAATAATAGATATTGATAATTATGTGTAAGTTTTAAGTCAAATTGCCAGTTAATGATTGCCATCATTTACATGCATGTGGGCCATGTTGATATCACATGACCAGTCTGCATCTTGGTAAATCTTATTATTGAACATTtttgctaataaaaaaatatttagtttttgcaTGGTGTGGCATTCGAGTTAGTTTCAAAACATATGCTTTTATGttgaaatgttaaaataaaatacaaatattgcgTAAATTCTAATAATTCAAAATATGTATATTCATTAAAAAAGTatggtgaataaaaaaaaaacagtcaaatttATTGGTATAAAGTCTCATTATATCTGTGTTATCAGaattataaatgattttaaacacagttgaagtcagaattattagccctcctgtttattttttcccaatttcagtttttttcattcagattcagattttttcaacacatttctatacataatagttttaataactcatctctaataactgatttatttgatctttcccatgatgacagtaaataatattttactagatatttttcaagacatttctctacagcttaaagtgacatttaaaggcttaacttaactagggtaattaggcaagttagtctaccgaacaaaccactgttatacactatcgaaaaaatacatagcttaaaggggctaataattttgaccttaaaatggttattaaaaatttgaaaactgcttttattctagccaaaataaaacaaataaaactttcttcagaagaaaaaatattatcagacatactgtgaaaatttccttgctctgttaagcatcatttgaggaatatttaagaaagaaaaataaattcaaagggggggctaataattctgacttcgactgtagcTGGTATAGAACTTGTTACAACTATTGCACCTAAGATTAGAACAAATAATACACTCGCCGAAATTCAGTATCATAGCTAAAATCGTCGCTGTGTAGCCTATAAAAGAGGCAAATATAAATACCTCACTGGTTTATattcttctctctttctctctctctgtctcagccCACACTAATCTCTCCACCCACGGTTATCGCGCGTGGCACGTTTCTTTGAAACTGATAAATGAAGCACAGCTCTGGCGGGCGCTGAATTGCGCAGAGCATCAAGCAACTACAGCACAGCTCTCTGCAGATTTCATTACATTCACTGCTTCTATGAGGCACTGCCCATTTCTGTATGTGAGGGAGGTGTGGTCTGGTGTCACCAGTTTACTAAATTCAAATAAGAAACAGTAGGATGCAGTCAACTGTTCTTTCTCTGACTATAGGAACCATTAGGCGATGTGTGTGAACCAGAGGAAAGAGCCTCAGGTGAATAGAGGATTTGTCAGAGAGGCGTGTGAGCGTGTCTGCTTAAAGCAGTCCTCAGGTAAttaatacacataaacacacagaccTTGTTATGTAACACACTGACTGGAGCATAACCTAATCCACTTTACCTGTGACACAGTGTTTGAGGACACACTTACGATTGTAGAATTGATTTTTAAGGTGAATCTTTATCCGCAGCAAGAGATTGACATTCAAAAGAGAGATCTTATAGAATCgctgtgtctgtttgtttgtttgtttgttcgcaGGGTCTTTCCTCTAAGAGTGCCCTCAACAGTCAACAACGTCGAAAGTCGCCTACTTTAAGCGAAAATATGCGGAAGAGGAGGATGTTCAGGGAAGCCTACATGGATATTTACAAAAAGTGAGTGTTTATCGTTCAGAAATAAAGTGGAGGGAAAATCTGATTGCCAGAAAGTATAATAAATATCAAATTAATATCATAATCAAACTAATGCTCATAGATTTAAGctacaaaagaaaatattgtcACAATTTAAGTCAAAAAAAGCAATGGATAGATACGAAtaaatgacaaaatggcagaacaAATAGACAGATTTAGATCCTTATAAGTTATATGAGCAACACATAATGTTCTTCtacatcaggggtgcccaaactcggtcctgtagggctggtgtcctgtagattttagctccaacttgcctcaacacacctgcacaggtgtttctagaaagcctaatgagagcttgattagctagcccaggtgtgtctaattggggtttgaactaaactttgcaggacaccggccctccaggactgagtttgggcacccctgttctagatCATTGCTGCAAAAACCTAATTTTGAAACCTTTATTTTTGTTAGAATGCTACAGAACGATAGACAGACTGATAAATTGTTTAGCATgaactatacactgtaaaacaaaaacagtcaaaTTTACGATGACTGCCAGAATTTTACTATCAGAAATACAGTAGAGACCCTAAAAGAAATGTCtcaattttacagtaaactaccatattttaatcatttgtagTGTTAAGACACCAATGTTTTGAAGCACTGTCCGTTGTGTGCATTGTACGCAATGCATGTTTGGTATACAGTCAAAACAAAAGCTTGGGAGGATGAAAAAGTCTTATGATGAACtcatcaaaaactgcttttctacAAGTAGAGAAACATATCAATATATTGACAGTGCTGTGttattcacacagctactaaacactaTCAGTCAAAATATTAAACTAACTAAACACTGTCCTAatgctccaacttgcttcaacacacctgcaaggatgttatTAGTATGACTAGTAAGAATGGATtaactagcccaggtgtgtctgattggggttggaactaaactctgcaggacaccggccctccaggtccGAGTCTGGACATGCCTGAACTAAAATAATACAACAAGCATTATTTATCCAcattaatcataactcaaatctCTAATGCACATAACTGATGAGACAAAAGCAAAAAAGATGGGGGTCCGTCTCCCTGTATACCgaaaaaaattatttcagtaaaattgttgcaaacaatttatacgagttgaatttaaacaaacaaagtaaatttagtaatgttcaacttaatttgcttatttaaattcagcccaaataaatagtctACAACCACTttaataaaacacttaaaaaaaattgtaaatccatgCAATCGTCTTTGAATCATTTGTATGTTTGTCTTTCTGTCCATTTTAAATTTATTCTTAgcataatataaaaagaaatattaattAAAGACAAAAATGGTTAAATAGTTCATGTGTATCTCATCAttcaaatatttctaaaataattttcaGTGTTGTCATAAATAAATGCACTGTATACATAATTTTCCTGCATATGATTACGAGGCAGCCACCTCCATCAGATTTTGCACCACCTCCACCTTTTGACAAAAATCTGGCTGGTTGACATGGCTACCAACAGACTCCAAGTAATGCTCAAACCCTGGTCATGTATTTAACATTAGCCttttaaaataagacaatattttaCTTCATAAGCTTACAAGAATGATGCAAAATGTGTTTGTCTCAAGTAGCTAAATTTCATGATCCAGAAACCACCTAGACCTCATTTTGAGTCATGATTATGGCTGGATTTATGCCAAATTTTtgcctgaattattagtcccctatatatttttccttcaatTGCTGTTTATTGGAAAGaagctttttttcaacacatttctaaacataatagttttaataactcataggttaattaggttaactaagcagctaattaggcaagttattgtataaccatggtttgttctgtagacaaccaagtaaaaatatagattaaaggggctaataattttgaccttaaaatagttttgaaaaattaaaagctgcttttattctggccgaaataaaacaaaaaagactttctccagaagaaaaaatattataggaaatcctgaaaaaatctttgctctgttaatcatcatttgggaactaGAAAAGTGAAGTTCATAGACAAACTTTATGGCGGCTTGAGAAATCTCAGTCTGAAAGTGAAGTGGTTTCAAAGTTTAAATAACTGAAGTAGATTTTAAGAAGTTCAAAAAAGTCAGCATAGATAGATAACTACCtatatgttagcatgtttcttgcATGAATCAGCATGTTTTTGCTAGGCAATTGACAGggggttctgagtggttgctaaggtgttgctaaggggttgctagggtgttctaaatggttgctaaggcactgctagggtgttctgagtgcaTGCTAAGGTGTAGCTAGGCAGATGCAAGGGTggtctgagtggttgcttgggtgttttgagtggttactaAGACATTACCAGGTGGTTTCTAGGGTATCTTAAGTGGTTGCTAgacattgttaggtggttgctaggatgttctgagtggttaatGGGCTGTTGCCAGGGTcctctaggtggttgctaaggcgttgctaggcagttgctagggtgttctaggtggttactAATATATTGCTAGGggtttgctaaggtgttgctaggtgattgctaaggtgttctagctTGTTGCCAAGTTGTTGCTAAGTGATTGCTagtgtgttctgagtggttgctgggtggttgcttaggcattgctagatggttgctaaggcattgcttgATGGTTGCTAAAAtgttctaggtcattgctaaggcattgttatgtggttgctaggtggtcgctaaggtgttactaggcagttcctaggtggttgctaaggcgttactaaggggttgctaaggtgttgctaggcggctTCTAGGGTGTTCTAAGCAGTTGCTAAGGCGttttaggttgttgctaaggtgttaggtggttgctagggtgttctaggtcgTTGCTACTGTGTTACAAGGTGTTTGCTTTGGTGCTCTGGGTatttgctaggcagttgctagcaAAATTAGCATGGCTCCagtatgaattagtatgttactagcatgttttaagtataaactagcatgttagcatgaatttagtatgaattagcatgttgctagtatgttagtatgttgttagtatgtttctagtatggattagtacattgttagcatgaattggtttgttgttagtatgtccaatgtaaagtcaatggcagttttttatacaatggaagtctatggggcagttgctagggtttcgtaagtggttgctagggtgtggctaataagttgaaaggtcatcagtgattggcagattggtagtctgagttaaatgagcccaaacttaagtctgtatgacagtcttgagaaaagttatgaggtcacaaagaaaacagaagaagaagaagaagtttaaagtacttaataattaataattaggcCTAATCATTTTTACTGGTTAAATAATAGAAACTTAAAGTTCAGACAGTCGTACGGGTCATGTGAACGACACATTTAACATTCTTCTCACGAGTCCCATCATCACCTCTGTCTCTCCTCCTCAGCACCTGATCCTGCGTGAGGAGCGCAGCTGCATCCTCCGTCTGTCCCTGCAGAAGCTGCGTTTCCTAGACGACCCCGAGGCGTACCTGCGCCGCTCCGTCCTGATCAACAACCTGCTCCGCAAGATCCACCTGGATGAGGCCCAGAGGGAGAAAGACAAACGGGAGGAGGAGGAGATCGAAAGGAGGCGCAAGAGACTCAAGCTGGTGCTCCAGGAGTATAAGCTGCTGCCGTATTCGTCCTCACCAGCCGCATGCATCTGTGGCCTGGGGAGCTGCCACACCCTGCCTCCTGATCATGGAGTGCTACTCTATCATTTGGATGAGAAAGGATAGGACGTCATCAGGAGCATCCAAAGGGGATTTCTAACAGCCCGTGAGGGATTTCCAGGAGCCGTGCGGCAAAAGGAGATCAGTGTTTGTGGAATTGTGCATGGTGAAGTCTGCTGGTGAGCCTGAGCTTTGCGGTTTCTGACAGACAGGTGTTTGTCCATATATCAGGGTGCATTTTTTCCAGCTGGAAAAAAGAGAACGTCGTCTTGTTATCACTGCCTCGCTCTGTTGATCTGAACTTTGACCACAGAcgcttttgttttcataaattttGCTTGAGTAAGCTATTATCTTAAGCACTGTTTTCAGGGATAAAAAAGGCAAATGAAAGCCATGCACTTTGTGGTAgttatgttgtaaaaaaaaaaaaaaaggcgaaTTTTAAATCGTCAGTGTCAAAGTCTTGCTAAGGATGGAGTGATTTTCCTGAAGCTTTTGTGCTGTGAAATGGACAACTTTGTGTACGTGGCCATGATTTTGAACAAgattatgattttattaatattctCAATAAATGCATCAATGCTGGTTTTATATCATGTAAA

Function

GO:

id name namespace
GO:0051963 regulation of synapse assembly biological_process
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0016082 synaptic vesicle priming biological_process
GO:0006906 vesicle fusion biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0051179 localization biological_process
GO:0015844 monoamine transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0032940 secretion by cell biological_process
GO:0140029 exocytic process biological_process
GO:0046903 secretion biological_process
GO:0051234 establishment of localization biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0048278 vesicle docking biological_process
GO:0048284 organelle fusion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0099500 vesicle fusion to plasma membrane biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0017157 regulation of exocytosis biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:1903530 regulation of secretion by cell biological_process
GO:0023061 signal release biological_process
GO:0061024 membrane organization biological_process
GO:0061025 membrane fusion biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0051046 regulation of secretion biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0050803 regulation of synapse structure or activity biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0051640 organelle localization biological_process
GO:0051641 cellular localization biological_process
GO:0051648 vesicle localization biological_process
GO:0051649 establishment of localization in cell biological_process
GO:0051650 establishment of vesicle localization biological_process
GO:0016050 vesicle organization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0030141 secretory granule cellular_component
GO:0043005 neuron projection cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0045202 synapse cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0031201 SNARE complex cellular_component
GO:0098793 presynapse cellular_component
GO:0098794 postsynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005215 transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013499 lncRNA downstream 417625 37110212 ~ 37110536 (-) True XLOC_006817
TCONS_00013498 lncRNA downstream 515925 37009812 ~ 37012236 (-) True XLOC_006815
TCONS_00013873 lncRNA downstream 530401 36995633 ~ 36997760 (-) True XLOC_006814
TCONS_00013101 lncRNA downstream 906236 36613162 ~ 36621925 (-) True XLOC_006805
TCONS_00013099 lncRNA downstream 916002 36587770 ~ 36612159 (-) True XLOC_006804
TCONS_00013142 lncRNA upstream 71272 37607057 ~ 37608372 (-) True XLOC_006832
TCONS_00013145 lncRNA upstream 74019 37609804 ~ 37613031 (-) False XLOC_006833
TCONS_00013144 lncRNA upstream 74019 37609804 ~ 37614979 (-) True XLOC_006833
TCONS_00013876 lncRNA upstream 96841 37632626 ~ 37636598 (-) False XLOC_006836
TCONS_00013875 lncRNA upstream 96841 37632626 ~ 37636598 (-) False XLOC_006836
TCONS_00013134 mRNA downstream 8344 37493729 ~ 37519817 (-) True XLOC_006828
TCONS_00013133 mRNA downstream 8387 37491804 ~ 37519774 (-) False XLOC_006828
TCONS_00013132 mRNA downstream 53172 37469093 ~ 37474989 (-) True XLOC_006827
TCONS_00013131 mRNA downstream 62619 37430202 ~ 37465542 (-) True XLOC_006826
TCONS_00013130 mRNA downstream 62637 37421333 ~ 37465524 (-) False XLOC_006826
TCONS_00013137 mRNA upstream 7713 37543498 ~ 37545487 (-) True XLOC_006830
TCONS_00013138 mRNA upstream 50706 37586491 ~ 37600600 (-) False XLOC_006831
TCONS_00013141 mRNA upstream 70111 37605896 ~ 37608441 (-) False XLOC_006832
TCONS_00013143 mRNA upstream 73673 37609458 ~ 37615029 (-) False XLOC_006833
TCONS_00013146 mRNA upstream 81733 37617518 ~ 37620091 (-) False XLOC_006834
TCONS_00013121 other downstream 349445 37178602 ~ 37178716 (-) True XLOC_006819
TCONS_00013107 other downstream 766845 36757555 ~ 36761316 (-) True XLOC_006809
TCONS_00013090 other downstream 993089 36530420 ~ 36535072 (-) False XLOC_006800
TCONS_00013082 other downstream 1128786 36399260 ~ 36399375 (-) True XLOC_006797
TCONS_00013081 other downstream 1197262 36321431 ~ 36330899 (-) True XLOC_006796
TCONS_00013139 other upstream 58730 37594515 ~ 37600539 (-) False XLOC_006831
TCONS_00013140 other upstream 62926 37598711 ~ 37599245 (-) True XLOC_006831
TCONS_00013157 other upstream 114888 37650673 ~ 37656690 (-) False XLOC_006839
TCONS_00013167 other upstream 1317352 38853137 ~ 38853252 (-) True XLOC_006846
TCONS_00013170 other upstream 1706770 39242555 ~ 39242672 (-) True XLOC_006848

Expression Profile

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