RNA id: TU32948


Basic Information

Item Value
RNA id TU32948
length 206
lncRNA type intronic
GC content 0.53
exon number 1
gene id G29130
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5838097 ~ 5838302 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTCTTTATAAGGTTTTAGATATTAGGTTTATTGGTAACCCATTGTTAAATGAATGAGATTTTTAAAAATTGACAAGCACTGTTTTCTTTCCTGTGCTGATGTATTTCCTTTTGAAATGGGAAGTTTGGACAGGACATATCATAGGGCATGTCCCTTTAAAAAACTGCCAGTAGACTTCAGTTGTCACAGCTATGACCACAATTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32947 lncRNA downstream 1192 5836647 ~ 5836905 (-) True G29129
TU32926 lncRNA downstream 7544 5827697 ~ 5830553 (-) True G29111
TU32904 lncRNA downstream 45399 5784288 ~ 5792698 (-) True G29091
TU32901 lncRNA downstream 55943 5781902 ~ 5782154 (-) True G29089
TU32896 lncRNA downstream 68387 5769248 ~ 5769710 (-) True G29084
TU32950 lncRNA upstream 1220 5839522 ~ 5843297 (-) True G29132
TU32976 lncRNA upstream 130176 5968478 ~ 5969129 (-) True G29153
TU33009 lncRNA upstream 206058 6044360 ~ 6045307 (-) True G29172
TU33085 lncRNA upstream 337394 6175696 ~ 6175900 (-) True G29233
TU33060 lncRNA upstream 447175 6285477 ~ 6298068 (-) True G29208
CI01000004_05803106_05809498.mRNA mRNA downstream 28599 5802857 ~ 5809498 (-) True CI01000004_05803106_05809498
CI01000004_05709639_05728550.mRNA mRNA downstream 109306 5708626 ~ 5728791 (-) True CI01000004_05709639_05728550
CI01000004_05617072_05627369.mRNA mRNA downstream 209808 5616644 ~ 5628289 (-) False CI01000004_05617072_05627369
CI01000004_05490354_05581387.mRNA mRNA downstream 256710 5490170 ~ 5581387 (-) True CI01000004_05490354_05581387
CI01000004_05482165_05486129.mRNA mRNA downstream 350237 5481646 ~ 5487860 (-) True CI01000004_05482165_05486129
CI01000004_05843593_05862033.mRNA mRNA upstream 5204 5843506 ~ 5862544 (-) True CI01000004_05843593_05862033
CI01000004_05902667_05905718.mRNA mRNA upstream 64353 5902655 ~ 5906852 (-) True CI01000004_05902667_05905718
CI01000004_05942638_05967553.mRNA mRNA upstream 104302 5942604 ~ 5967553 (-) True CI01000004_05942638_05967553
CI01000004_05976527_05978831.mRNA mRNA upstream 137102 5975404 ~ 5979754 (-) True CI01000004_05976527_05978831
CI01000004_06016711_06021356.mRNA mRNA upstream 178080 6016382 ~ 6021356 (-) True CI01000004_06016711_06021356
TU31692 other downstream 210583 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 634373 5178227 ~ 5203724 (-) False G27746
TU31343 other downstream 642994 5179993 ~ 5195103 (-) True G27746
TU30225 other downstream 2562376 3274433 ~ 3275721 (-) True G26788
TU29027 other downstream 4063156 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU33056 other upstream 696525 6534827 ~ 6545572 (-) True G29204
TU33263 other upstream 792991 6631293 ~ 6631907 (-) True G29388
TU33567 other upstream 2126062 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 2516196 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 2516196 8354498 ~ 8358127 (-) True G29746

Expression Profile