RNA id: TU33029


Basic Information

Item Value
RNA id TU33029
length 3370
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id G29188
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6399639 ~ 6403721 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTTTGAACATCCTGTTTACTGTATAACTAAACTCACATTGTAAACTCAAATGTTGAATTTATATGAATTATTTATTTCTCAGTAATGTTTTTATGAAGGTTATTCAAGTGCTGGAGTGATGCTTGTCGAAACGTTAAAAAGGACATTGAGGAAAAACTGTTCAAAACATTGATTGATATGGAGGCACAATTTCTAATCAGCTAAAATTCTTCTCCATTATACCAGCCATTATGAAAACATTATATATAATAGCTCTTCATTTACATTAATGTAATATCCACACTACAAGCATCACCATAAGAAATTGCAAAAGTAAAAACAGTTGGCCTTTAGGCTTTGGTCTTTCGACACTGCTTTAAACCGTCTTCCAGAGCTGCAAGAGCCATCGCAGCATTGGCCTTGTTGCAGTTGTATCCCATGAGTCCAATCCGCAAACCATGCCAACAGAGGGCCCTAGACCCCCTGTGAACTCTATTTGGTGATGCTTCATGATGTAAGCCAGCAATTCCTTCCAGTTATATCCCTCAGGGATGTCAATGGTGGTGACTGAGGGTAATCTCAGATCCTTTGGATATGGGAATATAGTTTAACTGCTTTCTCTTTTAGGGTGTATTATCATTTTCAGAATTAGTAAGTGAATTCAACAACCAAGTTACCCTGTCCTTGATGAACAGCTTCAAGTCCAGGTCTTCCAAGCCTTTCCAGAGATACTCTGCAACTTCTTTATGATGCCTCCACGAGTTCTCAAGACCCTTGAGCAGGGATTTTAGAATTATTAACCCCATGGTATCACATACTACTCATTAAAAAACCAAATGTATTGACTACCTTCTGCCTATGCAGACATATTTTGTAACAGATATACACTACCGTTCAAAAGTTTGGCCTCAGTAAGATATTGTTTTTTAAGAAAATAATCTTTTTATTCAGCAAGGACACATTAAATTGATCAAAAGTAATAGTAAAGACATTTATATCATTACAAAGATTTCTGTTTCTATTCATCAAATAATTCTGATAAGGATTGATAAATGGAAATCAGCATATTAGAAAGATTTCTGAAAGGATCATGTGACACTAAAGACTGGAGCAATGATGTGAAAATGCAGCTTTGACATCACAGGAATAAATTACATTTTCAAATAGATTCAAATAGAAATTATTTAAAATTGATATATATTACAATATTACTGTTTTACTCTATTTTTGATCAAATAAATGTAGCCTTGGGGAGCATTAGGAAAAAAAAAAGGTTAAGGAAATCTTACCAACCCCAAACTTCTGAATAGCAGTGCATGTAATTCATAAGTCTAAGCACCCAGACTGTTATAGTTTAAACAAATATACATAGTTGAGAAAACAAGCAGTAGGGACTGAGAGGTTAAGCAACATCTAAGATTATTATGACCAGGTGTTAAATGTTTACTTTAAGAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCAGCCCTTACCGTTTCAGCAAGGATGGCTAGACTTTCCCTCAGGGCAAAAAACCCAGACACAGGTCCTGTGTGATGATATCTGAAACATAGTTTAGTTAGTTTTACGCTATCCTTAACTCGGTCCTCTACTGAGCCTTGCAAGAGCAACAGTTTGTGCTTGCTATGCTTACATTCTATCTGGCTTGCCATCATTCCCCCAGTAATTGGACAAATGGGTCATATCAAGGAGGTAGGATACTGGCTTTGTTTTCCTGTTGAACATCTTGTGGCTATATCACATTTGAGGTGAAATAAGTAACATTAGTTAGAACGATTCTTTGTGTGCAAAAACATACTTGTATTTATTCACAAGTCTCTCCTCACCATGCTCTTTCGCTAAATGAAATTGGTGCTGTGCCAGGTGGAGCATTCAATGCTTTCTGGGATCCAGTATACAGAATATCAATATCTACAAAGAAAAAGAGGATTCATTGTGTAGAACACAAATGGTTGAATTTAATCCACAGGCTTTTACGCAGAGATTTAGAATATGCACATGATCTAATGGTCCTCCACTCACTTTGTTGGTCCATTAAAATTGGTGCAGCCCCCAATGATGCCACTGAATCCACTAAGAGCAAACAGTTGTATCTGTATAGATAAAACCATGCAAGAGCACATTGGTGGACAATACAGACATTTATTTTTTTTAAATTCTTAGAACACGTTTTTTATTTTTACCAAAACTACTATCATGTTTTGAATTAACCTTTTATTTTGCCTTTACCTTCTTTTAACATATTCCTCGGACCTCATTTAAACCCAGTAGCCAGATATTATGTTTTTATGGTGTTTTACACTCCTGACAGTGGATCATTTGTGAATCTCTACAGTGTGCACACCAATCATAAAATCTTGCATGTGTAAAAAAAAAAAATAATTGCATTTATTCATGTTTTTGTACTTGAGGTCAAACAGAATCATGAAAGTTTACAAAAAAAAGGTCAATAGAAGTCACACATTAATCTAAATGATTGTAGAATATTCTTACTTGTGACACATTTCCCCAACGCCGTCCACTGGGTGCACCAGACCAACTGATGACTCTCCATGTGCGAGAAAGAAGAGAACTGGCTTATGTTTAGCCAGAGCCTGTAGAATGACAAATGTTGGTTATAAAGCAGAGATTTGCTTTGATAGTCATAAAACTTACAGTGGCCATAATAGAAACAATATGCAAAGGAAACTCGTCTCAGCATCATTTATAAATGAAGTAAATGTTTTACCTGTTCAATTTCTGCATTAGTAAAATATCCTCCAGGTGTTTTTACCAAGGTGTGAACCTTTGCACCTGGGGAAAGAAAGATGTTTAAAGTGTGCTCTCATTAACAGATAAAGAATTTTTACAGAACAATGTGCTGACATTATTATTTGATTCATACCCATTCGCTCAGCAATTTCTGCGACTCGTTCTCCCCAGATTCCATTGACGGCAACGAGAACACTTTCTCCAGGCTCCACAATGTTGGACACGGCGCATTCCATCGCCGTGTGGCCAGAGCCACTCATGGCCAGAGTCATGTTGTTACTGGTCTGAAAAGCGTACTGGATTCCTTTCTTGATATCATTCATCTCAAACATTTCTGAGTGCATATGACCTATTATAGGTCTCCCTCCTGCCGCTAAAATACGAGGCGGCACATTAGATGGCCCTGGTCCGAACAGGTACCGGAATGGAGCCTCGAGTGGCCGGAGCATGCACGCCGGTGGAGGGATGGTAACAGAGGACATCCCGCGGTGGACGCTGTGTTTGGTGGACCGCGCGCATTCCAAAGGCACCTGCTTCGCCAAGTGCGCGCATCTGGAAAGGACAGTCCTCGGCATCATGTTTCTTCTCGCTGCAGTTCGTTAGAAGGACAAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33060 lncRNA downstream 101571 6285477 ~ 6298068 (-) True G29208
TU33085 lncRNA downstream 223739 6175696 ~ 6175900 (-) True G29233
TU33009 lncRNA downstream 354332 6044360 ~ 6045307 (-) True G29172
TU32976 lncRNA downstream 430510 5968478 ~ 5969129 (-) True G29153
TU32950 lncRNA downstream 556342 5839522 ~ 5843297 (-) True G29132
TU33260 lncRNA upstream 223853 6627574 ~ 6627791 (-) True G29385
TU33261 lncRNA upstream 224255 6627976 ~ 6628269 (-) True G29386
TU33262 lncRNA upstream 225345 6629066 ~ 6629470 (-) True G29387
TU33266 lncRNA upstream 251502 6655223 ~ 6656385 (-) True G29391
TU33278 lncRNA upstream 366641 6770362 ~ 6770583 (-) True G29402
CI01000004_06365131_06390103.mRNA mRNA downstream 9536 6364616 ~ 6390103 (-) True CI01000004_06365131_06390103
CI01000004_06345732_06359362.mRNA mRNA downstream 40118 6345621 ~ 6359521 (-) True CI01000004_06345732_06359362
CI01000004_06339829_06343806.mRNA mRNA downstream 55833 6339235 ~ 6343806 (-) True CI01000004_06339829_06343806
CI01000004_06325293_06337484.mRNA mRNA downstream 62155 6325012 ~ 6337484 (-) True CI01000004_06325293_06337484
CI01000004_06308316_06314451.mRNA mRNA downstream 84634 6308266 ~ 6315005 (-) True CI01000004_06308316_06314451
CI01000004_06406371_06415282.mRNA mRNA upstream 2650 6406371 ~ 6416418 (-) True CI01000004_06406371_06415282
CI01000004_06419749_06423949.mRNA mRNA upstream 15466 6419187 ~ 6423987 (-) True CI01000004_06419749_06423949
CI01000004_06441871_06454719.mRNA mRNA upstream 37755 6441476 ~ 6455013 (-) True CI01000004_06441871_06454719
CI01000004_06470183_06483783.mRNA mRNA upstream 66462 6470183 ~ 6483783 (-) True CI01000004_06470183_06483783
CI01000004_06497733_06501592.mRNA mRNA upstream 93984 6497705 ~ 6501592 (-) True CI01000004_06497733_06501592
TU31692 other downstream 772125 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 1195915 5178227 ~ 5203724 (-) False G27746
TU31343 other downstream 1204536 5179993 ~ 5195103 (-) True G27746
TU30225 other downstream 3123918 3274433 ~ 3275721 (-) True G26788
TU29027 other downstream 4624698 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU33056 other upstream 131106 6534827 ~ 6545572 (-) True G29204
TU33263 other upstream 227572 6631293 ~ 6631907 (-) True G29388
TU33567 other upstream 1560643 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 1950777 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 1950777 8354498 ~ 8358127 (-) True G29746

Expression Profile