RNA id: TU33260


Basic Information

Item Value
RNA id TU33260
length 218
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G29385
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6627574 ~ 6627791 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTGACGTCACTGCAGTGGTTTAACTTTAATATGCGCAAAAACAAAACAAAAATAACGGCTTTATTCAACAAGTTGTTGTTTACGTCCGAATGCCGGCTCAGTATTGGCCAAAGCTGTTCACGTGAGCAGCATGACACATTCGTGTGATGCTGACGCAGGAGCCGTCCAATAATGAGTCTGCGCTCTGACGTAAAACCTGGAAGCGCTGAACGTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33029 lncRNA downstream 223853 6399639 ~ 6403721 (-) True G29188
TU33060 lncRNA downstream 329506 6285477 ~ 6298068 (-) True G29208
TU33085 lncRNA downstream 451674 6175696 ~ 6175900 (-) True G29233
TU33009 lncRNA downstream 582267 6044360 ~ 6045307 (-) True G29172
TU32976 lncRNA downstream 658445 5968478 ~ 5969129 (-) True G29153
TU33261 lncRNA upstream 185 6627976 ~ 6628269 (-) True G29386
TU33262 lncRNA upstream 1275 6629066 ~ 6629470 (-) True G29387
TU33266 lncRNA upstream 27432 6655223 ~ 6656385 (-) True G29391
TU33278 lncRNA upstream 142571 6770362 ~ 6770583 (-) True G29402
TU33180 lncRNA upstream 144732 6772523 ~ 6841575 (-) False G29315
CI01000004_06569673_06570071.mRNA mRNA downstream 57403 6569596 ~ 6570171 (-) True CI01000004_06569673_06570071
CI01000004_06555703_06558890.mRNA mRNA downstream 68684 6555477 ~ 6558890 (-) True CI01000004_06555703_06558890
CI01000004_06547877_06549227.mRNA mRNA downstream 78347 6547390 ~ 6549227 (-) True CI01000004_06547877_06549227
CI01000004_06539836_06541252.mRNA mRNA downstream 86322 6538904 ~ 6541252 (-) False CI01000004_06539836_06541252
CI01000004_06510788_06533217.mRNA mRNA downstream 94192 6510400 ~ 6533382 (-) True CI01000004_06510788_06533217
CI01000004_06677179_06740196.mRNA mRNA upstream 49388 6677179 ~ 6740196 (-) True CI01000004_06677179_06740196
CI01000004_06805399_06814604.mRNA mRNA upstream 177426 6805217 ~ 6814604 (-) True CI01000004_06805399_06814604
CI01000004_06827636_06828127.mRNA mRNA upstream 199653 6827444 ~ 6828364 (-) False CI01000004_06827636_06828127
CI01000004_06915152_06921193.mRNA mRNA upstream 286798 6914589 ~ 6921193 (-) True CI01000004_06915152_06921193
CI01000004_06960750_06963258.mRNA mRNA upstream 332884 6960675 ~ 6963282 (-) False CI01000004_06960750_06963258
TU33056 other downstream 82002 6534827 ~ 6545572 (-) True G29204
TU31692 other downstream 1000060 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 1423850 5178227 ~ 5203724 (-) False G27746
TU31343 other downstream 1432471 5179993 ~ 5195103 (-) True G27746
TU30225 other downstream 3351853 3274433 ~ 3275721 (-) True G26788
TU33263 other upstream 3502 6631293 ~ 6631907 (-) True G29388
TU33567 other upstream 1336573 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 1726707 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 1726707 8354498 ~ 8358127 (-) True G29746
TU34309 other upstream 2750146 9377937 ~ 9406921 (-) True G30316

Expression Profile