RNA id: TU33263


Basic Information

Item Value
RNA id TU33263
length 615
RNA type TUCP
GC content 0.36
exon number 1
gene id G29388
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6631293 ~ 6631907 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGATTGTGTCTTGTCTACAGTCAAGCATGGTGGTGGTAGCATCATGATCTGGGGCTGCATGATTGCTGCTGGTACTGGGGAGCTCTGCTTCATTGAGGGAAACATGAATTCCTACATGTACTGTGACATTCTGAAGCAGAACATGATGCCCTCCCTTCAGATACCGGGCTGAACGGCATGATAATGACCCCAAACACACCGCCAAGATGACAACTGCCTTGCTGAGGAAGCTGAAGGTAAAGGTGATGGAGTGGCCAAGTATGTCTCCAGACCTGAACCCTATTGAGCATCTGTGGGACATCCTCAAGCGGAAGGTGGAAAAGCGCCATTTGTCTAACATCCAGCAGCTCCGTGATGTCATTATGGAGAAGTGGAAGAGGATCCCAGCAACAACCTGTGCAGCTCTGGTGAATTCCATGCCCAGGAGGATTAAGGCAGTGCTAGATAACAATGGTGCTCACACAAAATATTGACACTTTGGACACAGTTTTGACATGTTCACTTAGGGTGTACTCACTTTTGTTGCCAGTTATTTAGACAATAATGGCTGTATGTTGAGTTATTTTCAGAAGACAGTAAATCTGTACTGCTATACAAGCTGCACATTGTCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33262 lncRNA downstream 1823 6629066 ~ 6629470 (-) True G29387
TU33261 lncRNA downstream 3024 6627976 ~ 6628269 (-) True G29386
TU33260 lncRNA downstream 3502 6627574 ~ 6627791 (-) True G29385
TU33029 lncRNA downstream 227572 6399639 ~ 6403721 (-) True G29188
TU33060 lncRNA downstream 333225 6285477 ~ 6298068 (-) True G29208
TU33266 lncRNA upstream 23316 6655223 ~ 6656385 (-) True G29391
TU33278 lncRNA upstream 138455 6770362 ~ 6770583 (-) True G29402
TU33180 lncRNA upstream 140616 6772523 ~ 6841575 (-) False G29315
TU33284 lncRNA upstream 163415 6795322 ~ 6795621 (-) True G29408
TU33287 lncRNA upstream 172096 6804003 ~ 6804387 (-) True G29411
CI01000004_06569673_06570071.mRNA mRNA downstream 61122 6569596 ~ 6570171 (-) True CI01000004_06569673_06570071
CI01000004_06555703_06558890.mRNA mRNA downstream 72403 6555477 ~ 6558890 (-) True CI01000004_06555703_06558890
CI01000004_06547877_06549227.mRNA mRNA downstream 82066 6547390 ~ 6549227 (-) True CI01000004_06547877_06549227
CI01000004_06539836_06541252.mRNA mRNA downstream 90041 6538904 ~ 6541252 (-) False CI01000004_06539836_06541252
CI01000004_06510788_06533217.mRNA mRNA downstream 97911 6510400 ~ 6533382 (-) True CI01000004_06510788_06533217
CI01000004_06677179_06740196.mRNA mRNA upstream 45272 6677179 ~ 6740196 (-) True CI01000004_06677179_06740196
CI01000004_06805399_06814604.mRNA mRNA upstream 173310 6805217 ~ 6814604 (-) True CI01000004_06805399_06814604
CI01000004_06827636_06828127.mRNA mRNA upstream 195537 6827444 ~ 6828364 (-) False CI01000004_06827636_06828127
CI01000004_06915152_06921193.mRNA mRNA upstream 282682 6914589 ~ 6921193 (-) True CI01000004_06915152_06921193
CI01000004_06960750_06963258.mRNA mRNA upstream 328768 6960675 ~ 6963282 (-) False CI01000004_06960750_06963258
TU33056 other downstream 85721 6534827 ~ 6545572 (-) True G29204
TU31692 other downstream 1003779 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 1427569 5178227 ~ 5203724 (-) False G27746
TU31343 other downstream 1436190 5179993 ~ 5195103 (-) True G27746
TU30225 other downstream 3355572 3274433 ~ 3275721 (-) True G26788
TU33567 other upstream 1332457 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 1722591 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 1722591 8354498 ~ 8358127 (-) True G29746
TU34309 other upstream 2746030 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 4114530 10746437 ~ 10750641 (-) True G31203

Expression Profile