RNA id: TCONS_00013145


Basic Information

Item Value
RNA id TCONS_00013145
length 908
lncRNA type sense_over
GC content 0.39
exon number 2
gene id XLOC_006833
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 37609458 ~ 37615029 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGGGTCCTCCTTGCCAACCCTGACATAGAATATAAAAAATGGTTTCATGCTATTTACTAGTTTCTGTTGATGCAGAAGGACCTACACATGCCCTACATCAGGGGTTTCGAAACTCAGTCCTTctgggtcggtgtcctgcatattttagttccaaccccaattaaacacacctgaaccagctgatcaagctctttatatgtatacagtaacttccagacaggtgtgttgacggaagttggagctaaactatgcaggacaccagccctccaggacctagtttggacacccctgccctacatACACCACAGTGAGAACAACGATATATAATGAAGATTTAACCAATAAAATAGCTCTTCATTATAATTTAAAGAGAGCACAAGTTAAGTTTTAACAGCATTTCTATTATAAGAATTCTGGATAACAAAGACAtcataatttctttaaaaaatactgaaaattaagctttttattaaaaaaaattgcacgCAGGTGGAATTGCTGCAAGTTCGCTTGCCTCCAGCATGATGTCAGCAGCCGCTGTGGCAAACGGAGGCGGAATCGCTGCTGGATCAGTGGTAGCGGCCCTTCAAGCAGCAGgtgCTGCTGGGATCCCTGTTGCAGCTCAGGCTGTTATAGGTGCCATCGGGGGCACTCTGGGTGGTGCTTTGGGGGGATCATTTGTTTGTAGTGCAGGAGCTGCAggtgaaattatttattaattctgtgtattgaatttttttttctttataatataCGCTGCTTTTTCCAACACTTTTGAACTGTTTAACTACTGTATTGTGcacaaattatattaaatttaaatatttactacATTATCTGTTTCATCACATTATGGAACTTTTTTAATGAGTCTcacaatgtgttaaaaaatcaattgttttgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013142 lncRNA downstream 1432 37607057 ~ 37608372 (-) True XLOC_006832
TCONS_00013874 lncRNA downstream 74019 37528161 ~ 37535785 (-) True XLOC_006829
TCONS_00013135 lncRNA downstream 74380 37528161 ~ 37535424 (-) False XLOC_006829
TCONS_00013136 lncRNA downstream 74477 37528161 ~ 37535327 (-) False XLOC_006829
TCONS_00013499 lncRNA downstream 499268 37110212 ~ 37110536 (-) True XLOC_006817
TCONS_00013876 lncRNA upstream 19595 37632626 ~ 37636598 (-) False XLOC_006836
TCONS_00013875 lncRNA upstream 19595 37632626 ~ 37636598 (-) False XLOC_006836
TCONS_00013161 lncRNA upstream 577490 38190521 ~ 38195214 (-) True XLOC_006842
TCONS_00013877 lncRNA upstream 1000194 38613225 ~ 38619719 (-) True XLOC_006843
TCONS_00013163 lncRNA upstream 1050799 38663830 ~ 38666293 (-) False XLOC_006844
TCONS_00013141 mRNA downstream 1363 37605896 ~ 37608441 (-) False XLOC_006832
TCONS_00013138 mRNA downstream 9204 37586491 ~ 37600600 (-) False XLOC_006831
TCONS_00013137 mRNA downstream 64317 37543498 ~ 37545487 (-) True XLOC_006830
TCONS_00013134 mRNA downstream 89987 37493729 ~ 37519817 (-) True XLOC_006828
TCONS_00013133 mRNA downstream 90030 37491804 ~ 37519774 (-) False XLOC_006828
TCONS_00013146 mRNA upstream 4487 37617518 ~ 37620091 (-) False XLOC_006834
TCONS_00013147 mRNA upstream 4489 37617520 ~ 37620194 (-) False XLOC_006834
TCONS_00013148 mRNA upstream 4489 37617520 ~ 37620290 (-) False XLOC_006834
TCONS_00013149 mRNA upstream 4492 37617523 ~ 37619159 (-) True XLOC_006834
TCONS_00013150 mRNA upstream 10245 37623276 ~ 37631092 (-) True XLOC_006835
TCONS_00013139 other downstream 9265 37594515 ~ 37600539 (-) False XLOC_006831
TCONS_00013140 other downstream 10559 37598711 ~ 37599245 (-) True XLOC_006831
TCONS_00013121 other downstream 431088 37178602 ~ 37178716 (-) True XLOC_006819
TCONS_00013107 other downstream 848488 36757555 ~ 36761316 (-) True XLOC_006809
TCONS_00013090 other downstream 1074732 36530420 ~ 36535072 (-) False XLOC_006800
TCONS_00013157 other upstream 37642 37650673 ~ 37656690 (-) False XLOC_006839
TCONS_00013167 other upstream 1240106 38853137 ~ 38853252 (-) True XLOC_006846
TCONS_00013170 other upstream 1629524 39242555 ~ 39242672 (-) True XLOC_006848
TCONS_00013199 other upstream 3617262 41230293 ~ 41230409 (-) True XLOC_006866
TCONS_00013200 other upstream 4049941 41662972 ~ 41663088 (-) True XLOC_006867

Expression Profile

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