RNA id: TU33567


Basic Information

Item Value
RNA id TU33567
length 983
RNA type TUCP
GC content 0.39
exon number 2
gene id G29656
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7964364 ~ 7965500 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGTTGCAGTTCGCAACCTCAGCGCTAGATGCCGCTAATATTTACACAATGCACCTTTAATTAAAAGAAAAGAAAGAAGAAGGGCAGGGACTTGGTTCTATCCATCAGTTTTTCATTGGATTTTGAGATGTGGGCATTGCACTCAAAAAATAAGGTAGATAAATGCAAGCTTGCAGTCGATTGAGGAGTGATTGGGGTTTAAGTGGACTAAATGATTGGAGAACCCCACCATACGTCACCAGAGAAGTTGTTTCATTACAAAAAAAGATTGATTGATTTGTGCAATTTTGATAAAAACTTTAAAAAAAGAAAAGAAAAGAAAAAGAAACTGTTACAAGGAAGAATTGTTCACATTAAAATTAATAACATTCATTTAGAAAATAGGGTGAATTTTCATTTCATGCCAACTTTGAACATCACGGATGTTTTGACTCCCTGTGAGTGTCATGTTGTGTAGCAATTTTGCATTCAGTGTTGAATCTGTGGATAAATTACTAGTGGCTGGAATCATCACATCACATCAGGTTGTTGCATAAATATAGTGTATGCTCTCAGGACAGCCAGCATTTCCACAGAAACTAGGTCATACCTTTGCAAATGTGTCAATTTTATGAAATGAAGACAAAAATAAGCACTATCGTACCAGTCCTGAACGGCATTAAAGGAATCCCCATTGGTGATGTCATACATAAGAATGAAGCCCATAGCTCCACGATAGTATGCAGTGGTGATGGTCCTGTACCTTTCCTGTCCAGCAGTGTCCCATATTTGGAGCTTTATCCTCTTGTCATTCCGATAGATGGTCTTCACTTTGAAGTCTATGCCGACAGTGCTGACGAAAGCAGGTGTGAAGGAGTCATCAGCATAGCGGAACAGGAAACTGGTTTTTCCGACACTGCTGTTACCAATGATCAGGATCTTAAACATGTAATCAAAATTCTGATCCGTAGACTCTTTTTGTCCATATCGAGCATCATTTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33565 lncRNA downstream 3156 7958746 ~ 7961208 (-) True CI01000004_07960123_07960701
TU33468 lncRNA downstream 60267 7899358 ~ 7904097 (-) True G29562
TU33517 lncRNA downstream 127546 7834816 ~ 7836818 (-) True G29610
TU33515 lncRNA downstream 142301 7821842 ~ 7822063 (-) True G29608
TU33458 lncRNA downstream 160136 7800957 ~ 7804228 (-) True G29552
TU33441 lncRNA upstream 27734 7993234 ~ 7996737 (-) True G29539
TU33574 lncRNA upstream 58451 8023951 ~ 8025200 (-) True G29663
TU33578 lncRNA upstream 84057 8081875 ~ 8086030 (-) True G29667
TU33675 lncRNA upstream 371669 8337169 ~ 8339546 (-) True G29750
TU33754 lncRNA upstream 393403 8358903 ~ 8359102 (-) True G29829
CI01000004_07960123_07960701.mRNA mRNA downstream 3501 7960104 ~ 7960863 (-) False CI01000004_07960123_07960701
CI01000004_07829094_07830772.mRNA mRNA downstream 133551 7829003 ~ 7830813 (-) True CI01000004_07829094_07830772
CI01000004_07805884_07817962.mRNA mRNA downstream 145428 7805653 ~ 7818936 (-) True CI01000004_07805884_07817962
CI01000004_07792267_07797908.mRNA mRNA downstream 165902 7791898 ~ 7798462 (-) True CI01000004_07792267_07797908
CI01000004_07784930_07788318.mRNA mRNA downstream 175857 7783684 ~ 7788507 (-) True CI01000004_07784930_07788318
CI01000004_07998445_08008810.mRNA mRNA upstream 32733 7998233 ~ 8008810 (-) False CI01000004_07998445_08008810
CI01000004_08010634_08013275.mRNA mRNA upstream 44359 8009859 ~ 8013275 (-) True CI01000004_08010634_08013275
CI01000004_08030758_08033803.mRNA mRNA upstream 65011 8030511 ~ 8033803 (-) True CI01000004_08030758_08033803
CI01000004_08049634_08054074.mRNA mRNA upstream 83637 8049137 ~ 8054511 (-) False CI01000004_08049634_08054074
CI01000004_08103263_08106420.mRNA mRNA upstream 137763 8103263 ~ 8106420 (-) True CI01000004_08103263_08106420
TU33263 other downstream 1332457 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 1418792 6534827 ~ 6545572 (-) True G29204
TU31692 other downstream 2336850 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 2760640 5178227 ~ 5203724 (-) False G27746
TU31343 other downstream 2769261 5179993 ~ 5195103 (-) True G27746
TU33669 other upstream 388998 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 388998 8354498 ~ 8358127 (-) True G29746
TU34309 other upstream 1412437 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 2780937 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 3441965 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220

Expression Profile