RNA id: TU33773


Basic Information

Item Value
RNA id TU33773
length 484
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G29844
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8410726 ~ 8411219 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGCTGGTCATATAATTAGAATATCATCAAAAAGTTCATTTTTTTATTATAAATTATTTTTAAAAATGAAACTTTCATATATTCTAGATTCCCTACATGTAAAGTAAAACATTTCAAAAGTTTTTTTTTTAAATTTTGATGATTAGAGCGTACAGCTCATGAAAGTCCAAAATCCAGTATTTCAAAATATTAGAATATTTCCTAAAATCAATCAAAAAATGGATTTGCAAAACAGAAAAGTTAAAGTTCTTTAAAGTATGTTCTTTTGTGCACTCAATACTTGATCGGCAGGACATATTACAGCAAATGACTTGCTCCTAGCACAAATTACAGCATCAGTGAAGTGTGGCATGGAAGTGATCAGCCTGTGGCACTGCTGAGGCACTATTGAGCCTTCAGATCATCTGTATATTGTTGGATCGACTGTTTCTCATCTTTCTCTTGAAAATATCCCATAGATTTAGGTCAGGCATATTGGCTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33759 lncRNA downstream 39494 8369150 ~ 8371242 (-) True G29833
TU33754 lncRNA downstream 51634 8358903 ~ 8359102 (-) True G29829
TU33675 lncRNA downstream 71190 8337169 ~ 8339546 (-) True G29750
TU33578 lncRNA downstream 324706 8081875 ~ 8086030 (-) True G29667
TU33574 lncRNA downstream 385536 8023951 ~ 8025200 (-) True G29663
TU33809 lncRNA upstream 11843 8423062 ~ 8432906 (-) True G29865
TU33781 lncRNA upstream 71437 8482656 ~ 8523479 (-) False G29846
TU33783 lncRNA upstream 71437 8482656 ~ 8523479 (-) False G29846
TU33776 lncRNA upstream 106193 8517412 ~ 8523479 (-) False G29846
TU33777 lncRNA upstream 106193 8517412 ~ 8523479 (-) False G29846
CI01000004_08361560_08363939.mRNA mRNA downstream 46717 8361268 ~ 8364019 (-) True CI01000004_08361560_08363939
CI01000004_08258929_08273708.mRNA mRNA downstream 136937 8258778 ~ 8273799 (-) True CI01000004_08258929_08273708
CI01000004_08249849_08251049.mRNA mRNA downstream 159429 8249668 ~ 8251307 (-) True CI01000004_08249849_08251049
CI01000004_08233410_08241216.mRNA mRNA downstream 169417 8233178 ~ 8241319 (-) True CI01000004_08233410_08241216
CI01000004_08113788_08117378.mRNA mRNA downstream 292657 8113374 ~ 8118079 (-) True CI01000004_08113788_08117378
CI01000004_08587419_08590454.mRNA mRNA upstream 176108 8587327 ~ 8590557 (-) True CI01000004_08587419_08590454
CI01000004_08592797_08594424.mRNA mRNA upstream 181095 8592314 ~ 8594619 (-) True CI01000004_08592797_08594424
CI01000004_08714010_08716995.mRNA mRNA upstream 302663 8713882 ~ 8717059 (-) True CI01000004_08714010_08716995
CI01000004_08847888_08849951.mRNA mRNA upstream 435539 8846758 ~ 8850028 (-) True CI01000004_08847888_08849951
CI01000004_08857253_08860111.mRNA mRNA upstream 446034 8857253 ~ 8860111 (-) True CI01000004_08857253_08860111
TU33669 other downstream 52609 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 52609 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 445236 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 1778829 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 1865164 6534827 ~ 6545572 (-) True G29204
TU34309 other upstream 966718 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 2335218 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 2996246 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 3365300 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 3964949 12376168 ~ 12384780 (-) True G32207

Expression Profile