RNA id: TU33845


Basic Information

Item Value
RNA id TU33845
length 243
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G29900
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8527438 ~ 8527680 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGAGATTGTAGACGGGTGTTATTTGCGCATGCACCAGCAGGTGGCTCACGTGAGTCATCACTGGCAACAGAGCCAGGAAATACTGTATAATCAAGCAGCGCTTAATATGTGTTATAATGGCAAAATAATGATTTATTTAGTTTTAAATGAAACGACTGTAATCCTGATAGTATCCCCCCTTTTTTCAAAATGTAACTGTAATCTGATTACTACGTTTTTTGACGTAACTGTAACGAATTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33844 lncRNA downstream 1443 8524305 ~ 8525995 (-) True G29899
TU33777 lncRNA downstream 3959 8517412 ~ 8523479 (-) False G29846
TU33848 lncRNA upstream 11184 8538864 ~ 8539102 (-) True G29903
TU33851 lncRNA upstream 26493 8554173 ~ 8554562 (-) True G29906
TU33864 lncRNA upstream 50879 8578559 ~ 8581578 (-) True G29918
TU33876 lncRNA upstream 147145 8674825 ~ 8675065 (-) True G29928
TU33877 lncRNA upstream 147545 8675225 ~ 8675427 (-) True G29929
CI01000004_08361560_08363939.mRNA mRNA downstream 163419 8361268 ~ 8364019 (-) True CI01000004_08361560_08363939
CI01000004_08258929_08273708.mRNA mRNA downstream 253639 8258778 ~ 8273799 (-) True CI01000004_08258929_08273708
CI01000004_08249849_08251049.mRNA mRNA downstream 276131 8249668 ~ 8251307 (-) True CI01000004_08249849_08251049
CI01000004_08233410_08241216.mRNA mRNA downstream 286119 8233178 ~ 8241319 (-) True CI01000004_08233410_08241216
CI01000004_08113788_08117378.mRNA mRNA downstream 409359 8113374 ~ 8118079 (-) True CI01000004_08113788_08117378
CI01000004_08587419_08590454.mRNA mRNA upstream 59647 8587327 ~ 8590557 (-) True CI01000004_08587419_08590454
CI01000004_08592797_08594424.mRNA mRNA upstream 64634 8592314 ~ 8594619 (-) True CI01000004_08592797_08594424
CI01000004_08714010_08716995.mRNA mRNA upstream 186202 8713882 ~ 8717059 (-) True CI01000004_08714010_08716995
CI01000004_08847888_08849951.mRNA mRNA upstream 319078 8846758 ~ 8850028 (-) True CI01000004_08847888_08849951
CI01000004_08857253_08860111.mRNA mRNA upstream 329573 8857253 ~ 8860111 (-) True CI01000004_08857253_08860111
TU33669 other downstream 169311 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 169311 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 561938 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 1895531 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 1981866 6534827 ~ 6545572 (-) True G29204
TU34309 other upstream 850257 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 2218757 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 2879785 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 3248839 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 3848488 12376168 ~ 12384780 (-) True G32207

Expression Profile