RNA id: TU32684


Basic Information

Item Value
RNA id TU32684
length 444
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G28905
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8673758 ~ 8674201 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCCCCTCACTTACCAGGTTCCACTCTATCATCTCAGGACCTAAAGTGGGACAATCACATTGACTCCACTGTCAAAAAGGCCCAGCAGAGGTTATACTTCCTTCGCCAGCTGAGGAAGTTCAACTTGCCACAGGCCCTGCTGATGCAGTTCTACTCATCCGTCATTGAGTCTGTCCTCTGCACTTCAATAACTGTCTGGTTTGGCTCAGCTACAAAATCAGACATCAGAGACTAGAGGACTGTTTGGACTGCTGAGAGGATTATTGGAGCTCCCCTGAACTGCACTTCAAGAACTGTATACACCCAGAGAGAGAAAAGGGGCTCATAAAATCACATAAAATCACTCTGGGTCCCTCACATCCAAGCCACCTTCTCTTTGAACTTTTGCCGTCTGGCCAGCGCTACAGAGCATCAGAACAGCCAGGCACAAGAAATGTTCCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32683 lncRNA upstream 295 8673221 ~ 8673463 (+) True G28904
TU32650 lncRNA upstream 57223 8616221 ~ 8616535 (+) True G28872
TU32645 lncRNA upstream 67173 8606314 ~ 8606585 (+) True G28867
TU32641 lncRNA upstream 69831 8603605 ~ 8603927 (+) True G28863
TU32640 lncRNA upstream 70297 8603095 ~ 8603461 (+) True G28862
TU32688 lncRNA downstream 8506 8682707 ~ 8683005 (+) True G28909
TU32714 lncRNA downstream 187034 8861235 ~ 8861910 (+) True G28933
TU32734 lncRNA downstream 208195 8882396 ~ 8882600 (+) True G28947
TU32754 lncRNA downstream 221261 8895462 ~ 8896242 (+) True G28955
TU32758 lncRNA downstream 231971 8906172 ~ 8906381 (+) True G28959
CI01000004_08618566_08669147.mRNA mRNA upstream 4611 8618566 ~ 8669147 (+) True CI01000004_08618566_08669147
CI01000004_08573940_08586930.mRNA mRNA upstream 86588 8572741 ~ 8587170 (+) True CI01000004_08573940_08586930
CI01000004_08518587_08521540.mRNA mRNA upstream 152097 8518462 ~ 8521661 (+) True CI01000004_08518587_08521540
CI01000004_08507941_08515797.mRNA mRNA upstream 157450 8507941 ~ 8516308 (+) True CI01000004_08507941_08515797
CI01000004_08458998_08503889.mRNA mRNA upstream 169766 8458998 ~ 8503992 (+) True CI01000004_08458998_08503889
CI01000004_08693419_08703448.mRNA mRNA downstream 19218 8693419 ~ 8704156 (+) True CI01000004_08693419_08703448
CI01000004_08730011_08731219.mRNA mRNA downstream 55810 8730011 ~ 8732509 (+) True CI01000004_08730011_08731219
CI01000004_08736175_08742487.mRNA mRNA downstream 61974 8736175 ~ 8744387 (+) True CI01000004_08736175_08742487
CI01000004_08746864_08765484.mRNA mRNA downstream 72283 8746484 ~ 8765905 (+) True CI01000004_08746864_08765484
CI01000004_08806791_08812203.mRNA mRNA downstream 132590 8806791 ~ 8812562 (+) True CI01000004_08806791_08812203
TU32637 other upstream 74155 8599235 ~ 8599603 (+) True G28859
TU32590 other upstream 222531 8439958 ~ 8451227 (+) True G28818
TU32454 other upstream 1017375 7654772 ~ 7654879 (+) True G28706
TU32079 other upstream 2099337 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 2171671 6470028 ~ 6502087 (+) True G28302
TU32792 other downstream 302237 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 302237 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033
TU34813 other downstream 1823175 10497376 ~ 10497788 (+) True G30797
TU35938 other downstream 2963050 11637251 ~ 11642400 (+) True G31710
TU35811 other downstream 2990572 11664773 ~ 11665473 (+) False G31611

Expression Profile