RNA id: TU33918


Basic Information

Item Value
RNA id TU33918
length 830
lncRNA type antisense_over
GC content 0.47
exon number 7
gene id G29955
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8872133 ~ 8873812 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTTTATAACATTTATTTTATACTGTACAGATGTAATTGGCAATAATGTAGACATGGTTATTTGCACGGTGCTGAAGGCTAGTTCATTTATGCCAAAACTCCGCTGTGTAAAATTTGTAAACATAGTCAGGTCACTCCTCCCAAGGGCTCATGTCTGTGTCGATGGCCACACAGTTATATGCAGCATAGCGAAGCTTCTCTTCACAAACTTTAGCACTTGGGTATTTGGGTAGATAAAGGGTGCTGGAACATGTGGAAGATTGAGGAAGTGCATCTGTGGTTTCAGACCCTTGTTTATCTGGAAAGATGTAAATTGGAGCAGGAAGACGACTTCTGCCAGTCACAAACCTCAAAAACCTACTACGATCCTCATTGGTGAAGTTCATCAGGGCTTCCCATAAGTACTGCACTCTGACATCTGTTTGTTCCAAGTCTTCATAGCGTGTGAGGCGTTTAAGGGCCTCCACTGTGATCTCTGGGTCTCCACACACTTTCTTCTCCACTTCCTGCCATGTCAGGAGATCAAGCACAGCTTGCGGCACCACTTTCACCAGTCCTGCCTGCATGGCAGCTATCTGTTCTCGGCTCTCTTCTAGTCTCGATTTCTGTACCAGGCGTATGAACTCCATGCGATCTTCATATCGGACCACCACTCCACTTCCTCCTGGAATCAGCTCCACCAGCCGCCCGTCACTCAGGGGTGTGGTGTACACAAGCTCCTGGCCGAACTTAAAGTCAAACGTGTCCTTGTCCATATGCTCCATAGCCTCCAATAACTTCACCAGCACTGAATCTACTGCAGGAAAATCTTTCGTCCAGCTGACCGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33955 lncRNA downstream 49656 8822269 ~ 8822477 (-) True G29989
TU33951 lncRNA downstream 56596 8813396 ~ 8815537 (-) True G29986
TU33911 lncRNA downstream 127727 8741906 ~ 8744406 (-) True G29948
TU33877 lncRNA downstream 196706 8675225 ~ 8675427 (-) True G29929
TU33876 lncRNA downstream 197068 8674825 ~ 8675065 (-) True G29928
TU33899 lncRNA upstream 885 8874697 ~ 8877199 (-) False G29943
TU33902 lncRNA upstream 885 8874697 ~ 8877199 (-) True G29943
TU33977 lncRNA upstream 105212 8979024 ~ 8980984 (-) True G30009
TU33980 lncRNA upstream 170613 9044425 ~ 9044678 (-) True G30012
TU33981 lncRNA upstream 176144 9049956 ~ 9050446 (-) True G30013
CI01000004_08861514_08864815.mRNA mRNA downstream 7318 8861240 ~ 8864815 (-) True CI01000004_08861514_08864815
CI01000004_08857253_08860111.mRNA mRNA downstream 12022 8857253 ~ 8860111 (-) True CI01000004_08857253_08860111
CI01000004_08847888_08849951.mRNA mRNA downstream 22105 8846758 ~ 8850028 (-) True CI01000004_08847888_08849951
CI01000004_08714010_08716995.mRNA mRNA downstream 155074 8713882 ~ 8717059 (-) True CI01000004_08714010_08716995
CI01000004_08592797_08594424.mRNA mRNA downstream 277514 8592314 ~ 8594619 (-) True CI01000004_08592797_08594424
CI01000004_08878465_08881325.mRNA mRNA upstream 4653 8878465 ~ 8881485 (-) True CI01000004_08878465_08881325
CI01000004_08887155_08890419.mRNA mRNA upstream 11947 8885759 ~ 8890419 (-) True CI01000004_08887155_08890419
CI01000004_08896031_08915598.mRNA mRNA upstream 21763 8895575 ~ 8915662 (-) True CI01000004_08896031_08915598
CI01000004_08931605_08938354.mRNA mRNA upstream 57162 8930974 ~ 8938354 (-) True CI01000004_08931605_08938354
CI01000004_08939621_08940367.mRNA mRNA upstream 65517 8939329 ~ 8940413 (-) True CI01000004_08939621_08940367
TU33669 other downstream 514006 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 514006 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 906633 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 2240226 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 2326561 6534827 ~ 6545572 (-) True G29204
TU34309 other upstream 504125 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 1872625 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 2533653 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 2902707 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 3502356 12376168 ~ 12384780 (-) True G32207

Expression Profile