RNA id: TU33899


Basic Information

Item Value
RNA id TU33899
length 735
lncRNA type antisense_over
GC content 0.49
exon number 6
gene id G29943
representative False

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8874697 ~ 8877199 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGAGTTGGGGTATTTTCTTTAATGGTCGTATCAAAGAGAGCTGTACATTTATTTGCCTTTCTTGGCTTTAATCTTCCTCAGGTAGAACTCCAGTTCTTTGCCCTCAATAATATAGCCATCGGCCCTGCCACACTGTCCTGGTCTGGAGGCAATGCAGCAAGAAGTTTTCCCTGCAGGAACTGATCCTCCAACAGAGGACTGATTTTGCTGTTCTTTCTGCGAGTGTCAAACTTCTTTTGGACCTTTTTCGACCTCTTCTTGTTCAGGATTTCCTCTTCCTCAGGGGTCAGCTTGGCTCCCTTCTTCCTGCCAAGCGGGAGGGCGTAGTGAGACTCATACCACTGTCTGTAAGGAGTGCTGTCCACAAGGACCACACAGTTCTTCACCAGGGTCTTGGTTCTAACAAGCTCATTGTTAGAGGCGTTGTAGACCACATCGATGATCCTGGTCTTGCGGGTACAGCACTCTGAGCCCCATGAGAAGTTGCCCACGTCGAGCCTCAAGGCACGGTATTTCTTGTTTCCACCACGGACTCTTATTGTGTGGATGCGCCGAGCTCCAATCTTGGTATTTGCGGGAGGTCGCCCGAGCTCATATTTCCTTTTCTTGTGGACGGGCTTGCGTTTGCCACCGGTCTTACGGCGTTTGTGCCAGTTGTCCCTTGAGATACCCATTCTCAGGCGCCGGCTAGAAAGAGGACTAGCAAAGGCTCATGGGCGGGTTTCAAGCAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33918 lncRNA downstream 885 8872133 ~ 8873812 (-) True G29955
TU33955 lncRNA downstream 52220 8822269 ~ 8822477 (-) True G29989
TU33951 lncRNA downstream 59160 8813396 ~ 8815537 (-) True G29986
TU33911 lncRNA downstream 130291 8741906 ~ 8744406 (-) True G29948
TU33877 lncRNA downstream 199270 8675225 ~ 8675427 (-) True G29929
TU33977 lncRNA upstream 101825 8979024 ~ 8980984 (-) True G30009
TU33980 lncRNA upstream 167226 9044425 ~ 9044678 (-) True G30012
TU33981 lncRNA upstream 172757 9049956 ~ 9050446 (-) True G30013
TU33992 lncRNA upstream 219522 9096721 ~ 9096984 (-) True G30024
TU34009 lncRNA upstream 280246 9157445 ~ 9157660 (-) True G30041
CI01000004_08861514_08864815.mRNA mRNA downstream 9882 8861240 ~ 8864815 (-) True CI01000004_08861514_08864815
CI01000004_08857253_08860111.mRNA mRNA downstream 14586 8857253 ~ 8860111 (-) True CI01000004_08857253_08860111
CI01000004_08847888_08849951.mRNA mRNA downstream 24669 8846758 ~ 8850028 (-) True CI01000004_08847888_08849951
CI01000004_08714010_08716995.mRNA mRNA downstream 157638 8713882 ~ 8717059 (-) True CI01000004_08714010_08716995
CI01000004_08592797_08594424.mRNA mRNA downstream 280078 8592314 ~ 8594619 (-) True CI01000004_08592797_08594424
CI01000004_08878465_08881325.mRNA mRNA upstream 1266 8878465 ~ 8881485 (-) True CI01000004_08878465_08881325
CI01000004_08887155_08890419.mRNA mRNA upstream 8560 8885759 ~ 8890419 (-) True CI01000004_08887155_08890419
CI01000004_08896031_08915598.mRNA mRNA upstream 18376 8895575 ~ 8915662 (-) True CI01000004_08896031_08915598
CI01000004_08931605_08938354.mRNA mRNA upstream 53775 8930974 ~ 8938354 (-) True CI01000004_08931605_08938354
CI01000004_08939621_08940367.mRNA mRNA upstream 62130 8939329 ~ 8940413 (-) True CI01000004_08939621_08940367
TU33669 other downstream 516570 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 516570 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 909197 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 2242790 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 2329125 6534827 ~ 6545572 (-) True G29204
TU34309 other upstream 500738 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 1869238 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 2530266 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 2899320 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 3498969 12376168 ~ 12384780 (-) True G32207

Expression Profile