RNA id: TU32775


Basic Information

Item Value
RNA id TU32775
length 210
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G28976
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8938966 ~ 8939175 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGAAATGCGTTCATGTTCCAATTGCTCATATAATGTAAGTATAATGTTAAGTTCAAAGTATCTTATTTTGTGTTCTGCAGAGAAATAAAGAAGTCACACAGGTTTGGGAACAACATGAGTGTGAGTAAATGATGACAGAATTTATATTTTGGGTAGATTATCCCTCTAAACATATAGCCCGCTCAGAAATGTAATTCTGCGCAAATTTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32774 lncRNA upstream 103 8936419 ~ 8938863 (+) True G28975
TU32772 lncRNA upstream 11476 8927145 ~ 8927490 (+) True G28973
TU32770 lncRNA upstream 12886 8925795 ~ 8926080 (+) True G28971
TU32768 lncRNA upstream 16026 8922722 ~ 8922940 (+) True G28969
TU32767 lncRNA upstream 16281 8922483 ~ 8922685 (+) True G28968
TU32708 lncRNA downstream 27840 8967015 ~ 8970631 (+) True G28929
TU32789 lncRNA downstream 32654 8971829 ~ 8973638 (+) True G28989
TU32795 lncRNA downstream 44315 8983490 ~ 8983703 (+) True G28992
TU32797 lncRNA downstream 78630 9017805 ~ 9021061 (+) True G28994
TU32802 lncRNA downstream 84877 9024052 ~ 9024252 (+) True G28999
CI01000004_08875722_08877149.mRNA mRNA upstream 61459 8875722 ~ 8877507 (+) True CI01000004_08875722_08877149
CI01000004_08866163_08873681.mRNA mRNA upstream 65170 8866034 ~ 8873796 (+) True CI01000004_08866163_08873681
CI01000004_08823382_08844233.mRNA mRNA upstream 94621 8822749 ~ 8844345 (+) True CI01000004_08823382_08844233
CI01000004_08806791_08812203.mRNA mRNA upstream 126404 8806791 ~ 8812562 (+) True CI01000004_08806791_08812203
CI01000004_08746864_08765484.mRNA mRNA upstream 173061 8746484 ~ 8765905 (+) True CI01000004_08746864_08765484
CI01000004_08947119_08949558.mRNA mRNA downstream 7944 8947119 ~ 8949644 (+) True CI01000004_08947119_08949558
CI01000004_08976512_08980033.mRNA mRNA downstream 37079 8976254 ~ 8980958 (+) False CI01000004_08976512_08980033
CI01000004_08987501_08991239.mRNA mRNA downstream 47983 8987158 ~ 8991469 (+) True CI01000004_08987501_08991239
CI01000004_08996083_08997863.mRNA mRNA downstream 56908 8996083 ~ 8997863 (+) True CI01000004_08996083_08997863
CI01000004_09002274_09004879.mRNA mRNA downstream 62867 9002042 ~ 9005023 (+) True CI01000004_09002274_09004879
TU32637 other upstream 339363 8599235 ~ 8599603 (+) True G28859
TU32590 other upstream 487739 8439958 ~ 8451227 (+) True G28818
TU32454 other upstream 1282583 7654772 ~ 7654879 (+) True G28706
TU32079 other upstream 2364545 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 2436879 6470028 ~ 6502087 (+) True G28302
TU32792 other downstream 37263 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 37263 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033
TU34813 other downstream 1558201 10497376 ~ 10497788 (+) True G30797
TU35938 other downstream 2698076 11637251 ~ 11642400 (+) True G31710
TU35811 other downstream 2725598 11664773 ~ 11665473 (+) False G31611

Expression Profile