Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU32708 |
| length | 649 |
| lncRNA type | antisense_over |
| GC content | 0.41 |
| exon number | 8 |
| gene id | G28929 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 8967015 ~ 8970631 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU32775 | lncRNA | upstream | 27840 | 8938966 ~ 8939175 (+) | True | G28976 |
| TU32774 | lncRNA | upstream | 28152 | 8936419 ~ 8938863 (+) | True | G28975 |
| TU32772 | lncRNA | upstream | 39525 | 8927145 ~ 8927490 (+) | True | G28973 |
| TU32770 | lncRNA | upstream | 40935 | 8925795 ~ 8926080 (+) | True | G28971 |
| TU32768 | lncRNA | upstream | 44075 | 8922722 ~ 8922940 (+) | True | G28969 |
| TU32789 | lncRNA | downstream | 1198 | 8971829 ~ 8973638 (+) | True | G28989 |
| TU32795 | lncRNA | downstream | 12859 | 8983490 ~ 8983703 (+) | True | G28992 |
| TU32797 | lncRNA | downstream | 47174 | 9017805 ~ 9021061 (+) | True | G28994 |
| TU32802 | lncRNA | downstream | 53421 | 9024052 ~ 9024252 (+) | True | G28999 |
| TU32813 | lncRNA | downstream | 70453 | 9041084 ~ 9042246 (+) | True | G29010 |
| CI01000004_08947119_08949558.mRNA | mRNA | upstream | 17371 | 8947119 ~ 8949644 (+) | True | CI01000004_08947119_08949558 |
| CI01000004_08875722_08877149.mRNA | mRNA | upstream | 89508 | 8875722 ~ 8877507 (+) | True | CI01000004_08875722_08877149 |
| CI01000004_08866163_08873681.mRNA | mRNA | upstream | 93219 | 8866034 ~ 8873796 (+) | True | CI01000004_08866163_08873681 |
| CI01000004_08823382_08844233.mRNA | mRNA | upstream | 122670 | 8822749 ~ 8844345 (+) | True | CI01000004_08823382_08844233 |
| CI01000004_08806791_08812203.mRNA | mRNA | upstream | 154453 | 8806791 ~ 8812562 (+) | True | CI01000004_08806791_08812203 |
| CI01000004_08976512_08980033.mRNA | mRNA | downstream | 5623 | 8976254 ~ 8980958 (+) | False | CI01000004_08976512_08980033 |
| CI01000004_08987501_08991239.mRNA | mRNA | downstream | 16527 | 8987158 ~ 8991469 (+) | True | CI01000004_08987501_08991239 |
| CI01000004_08996083_08997863.mRNA | mRNA | downstream | 25452 | 8996083 ~ 8997863 (+) | True | CI01000004_08996083_08997863 |
| CI01000004_09002274_09004879.mRNA | mRNA | downstream | 31411 | 9002042 ~ 9005023 (+) | True | CI01000004_09002274_09004879 |
| CI01000004_09173580_09175411.mRNA | mRNA | downstream | 201121 | 9171752 ~ 9175657 (+) | True | CI01000004_09173580_09175411 |
| TU32637 | other | upstream | 367412 | 8599235 ~ 8599603 (+) | True | G28859 |
| TU32590 | other | upstream | 515788 | 8439958 ~ 8451227 (+) | True | G28818 |
| TU32454 | other | upstream | 1310632 | 7654772 ~ 7654879 (+) | True | G28706 |
| TU32079 | other | upstream | 2392594 | 6572819 ~ 6574421 (+) | True | G28354 |
| TU32005 | other | upstream | 2464928 | 6470028 ~ 6502087 (+) | True | G28302 |
| TU32792 | other | downstream | 5807 | 8976438 ~ 8980984 (+) | False | CI01000004_08976512_08980033 |
| TU32793 | other | downstream | 5807 | 8976438 ~ 8980984 (+) | True | CI01000004_08976512_08980033 |
| TU34813 | other | downstream | 1526745 | 10497376 ~ 10497788 (+) | True | G30797 |
| TU35938 | other | downstream | 2666620 | 11637251 ~ 11642400 (+) | True | G31710 |
| TU35811 | other | downstream | 2694142 | 11664773 ~ 11665473 (+) | False | G31611 |
