RNA id: TU34050


Basic Information

Item Value
RNA id TU34050
length 1505
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G30079
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 9224449 ~ 9240966 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAACCACTGTAAAAAAAAAAAAAAACCTGTACACGTGACAGCATAGAGCACTACAAAAACGTTTTGCCGCTTTAAGTTTCTCCACTGAGACTGAGGTTTTCGAGAAAGGAATAGGCTTAATACAAAAGACTCCCCTTCAAACGCTCGCTGTCATAAGGGTTCTCTCTACAAACTTACAAAATAACATCTCAAAATAACTCAGGTTGACAGCATCAACTGAAAGGCAAGTACTATACATTTTCAATGATTAAATCCACTCTGGCCTGTCCTGCTTGATACATCAAAGTCTATTCACTACGAGTTTGACTTGTATTTTGGTCGGCGCAACTGCAGGATACTTCAGGAGTTGTGATAGCGATGCGCCTCGGCCCAAATTTTTCTTGTGGAACTAAGGCCTGATAACAGATATGAAGCTATGCATAACGGATATTTTACAAAGCAACAGCTGCAGATCCTCACTAGGCAATGCGTTCGGAAAAGATATCGGTGCTCTCGGTTGCTGAATTTGTATTGATTTTTTTTTGAAGAACCTATGAGTCATAGAAACATCTGATAGAACAGAAACATTGATCTTTCGAGCATCACTGCTGTATGGCTAGCTGGATGGCACTGTTCTCATTTATAACCATGGGGAGAGCACTTCAAATGTCACTTAGAAACAATTGGTATTCCTGGACCAGCTCGCATGGTGCTGCGGTCCACCGTCCATTATTCTCTTGGGCCTGAAGATCGCTCTTTGGGCGCTTGCAACCACACCCCAAGTCCAGACTTGGCATCTAACTGCAATTTAAATAGAAGTGCTTCCGACTTGAATCTCCACAGTCTATTCGTTATCAAAACCGCTGCTCTCTGCAGATATATCTCCCCCCTGCGCATTGAATGTTCCCTTTTTTTTGCTCTCCTCTTCTGTCAAGCATCAATGAGTCAGTGGTATACTCTTGATCATTGTTCATTTCCATTATGCCCTTGATTGAGCAGACCTTGGCAGTAATTTTAATCCCGGCTAGGAGGAGAATATATTGCTGCTGTCGCCGTGACCGTACAGGTCGGCTAGCTTCCTGAAGCGAGGTCCCCAGTCGCTCAGATAGTCATAGTTCTGCTCCGAGTCTGTGCTCAGGGAGTCCAGGGAGCTGAGGGACTCAGCCACAGAGCCGCTGCCCTCGAAAGCGTACGTCTGCAGGGAGTCGTAGGGAGGCGCTGAAGGATCGACGTCGGCGTCCTTCAGGCGGTCCCATATAAATTCCCGGAAGATCCCGTTGTCGGGAGTGATTTTGTAAGGGGGAGGCCGGGAGCAGTAAAGGGTGGGCACCTCCGGGGTGACGTCTCGGCGGGATTTGCTGTCCCTCACTACGTTGAGGTTTCGCAATGCCACCATGTCAAAGGCCTCTGTGTCTTCCTCACCGCCGCCTTCATCGTCGTAGCGCACAATGTTCTCCCTCACATCCCGGTCTTCGTCCAGGATCAGAGGTTCCTTCTTCCTCCTCCTCATTGTCACTATCAGCAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34020 lncRNA downstream 10934 9212091 ~ 9213515 (-) True G30050
TU34016 lncRNA downstream 35065 9173367 ~ 9189384 (-) True G30048
TU34017 lncRNA downstream 35065 9172680 ~ 9189384 (-) False G30048
TU34009 lncRNA downstream 66789 9157445 ~ 9157660 (-) True G30041
TU33992 lncRNA downstream 127465 9096721 ~ 9096984 (-) True G30024
TU34062 lncRNA upstream 3858 9244824 ~ 9245047 (-) True G30091
TU34063 lncRNA upstream 4785 9245751 ~ 9245958 (-) True G30092
TU34067 lncRNA upstream 9801 9250767 ~ 9250985 (-) True G30096
TU34072 lncRNA upstream 16084 9257050 ~ 9257316 (-) True G30101
TU34079 lncRNA upstream 21662 9262628 ~ 9262835 (-) True G30108
CI01000004_09179343_09182737.mRNA mRNA downstream 40731 9177975 ~ 9183718 (-) True CI01000004_09179343_09182737
CI01000004_09159241_09169070.mRNA mRNA downstream 52732 9158475 ~ 9171717 (-) False CI01000004_09159241_09169070
CI01000004_09006723_09020870.mRNA mRNA downstream 203579 9006723 ~ 9020870 (-) True CI01000004_09006723_09020870
CI01000004_08958415_08969605.mRNA mRNA downstream 254844 8958279 ~ 8969605 (-) True CI01000004_08958415_08969605
CI01000004_08953993_08957525.mRNA mRNA downstream 266924 8953852 ~ 8957525 (-) True CI01000004_08953993_08957525
CI01000004_09324170_09327754.mRNA mRNA upstream 82580 9323546 ~ 9327754 (-) True CI01000004_09324170_09327754
CI01000004_09329111_09337596.mRNA mRNA upstream 88020 9328986 ~ 9337596 (-) True CI01000004_09329111_09337596
CI01000004_09367511_09370243.mRNA mRNA upstream 126495 9367461 ~ 9370243 (-) True CI01000004_09367511_09370243
CI01000004_09425074_09426973.mRNA mRNA upstream 184001 9424967 ~ 9428395 (-) True CI01000004_09425074_09426973
CI01000004_09486618_09488654.mRNA mRNA upstream 245391 9486357 ~ 9488654 (-) True CI01000004_09486618_09488654
TU33669 other downstream 866322 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 866322 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 1258949 7964364 ~ 7965500 (-) True G29656
TU33263 other downstream 2592542 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 2678877 6534827 ~ 6545572 (-) True G29204
TU34309 other upstream 136971 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 1505471 10746437 ~ 10750641 (-) True G31203
TU36279 other upstream 2166499 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 2535553 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 3135202 12376168 ~ 12384780 (-) True G32207

Expression Profile